germline mutation calling using per-sample module
Hi,I'm a newer to gatk. I try to use gatk to call germline mutation from my tumor data. I see that there are to modules, per-sample and joint genotyping, I wonder that per sample module compatible to hg19 reference genome? the attached picture shows that per sample module only support hg38. Hope your response!
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Thank you for your post, chenglei! I want to let you know we have received your question and will be moving it to the Community Discussions -> Documentation Questions topic, as the Germline topic is for reporting bugs and issues with GATK.
We'll get back to you if we have any updates or follow up questions. Please see our Support Policy for more details about how we prioritize responding to questions.
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