JointGermlineCNVSegmentation

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Yangyxt

• April 30, 2022 06:56

REQUIRED for all errors and issues:
a) GATK version used: 4.2.5.0
b) Exact command used: NA
c) Entire program log:NA

Why there isnt a manual for JointGermlineCNVSegmentation this tool ?

I saw this tool has been published for over a year now but still cannot locate it in the Tool index. Could you pls consider adding a manual about this tool? 

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  Genevieve Brandt (she/her)

  • May 03, 2022 20:37

  Thank you for your post, Yangyxt! I want to let you know we have received your question. We'll get back to you if we have any updates or follow up questions. 

  Please see our Support Policy for more details about how we prioritize responding to questions. 

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  Genevieve Brandt (she/her)

  • May 24, 2022 20:54

  Hi Yangyxt,

  Thank you for pointing this out so we can make this change. We have added the necessary annotation to the tool so it will show up in the tool docs in the next release.

  See this PR for more information: https://github.com/broadinstitute/gatk/pull/7871

  You can also see the information that will eventually appear in the tool docs in the text of the tool: https://github.com/broadinstitute/gatk/blob/master/src/main/java/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation.java

  Let me know if you have any other questions.

  Best,

  Genevieve

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