REQUIRED for all errors and issues:
a) GATK version used: 22.214.171.124
b) Exact command used: NA
c) Entire program log:NA
Why there isnt a manual for JointGermlineCNVSegmentation this tool ?
I saw this tool has been published for over a year now but still cannot locate it in the Tool index. Could you pls consider adding a manual about this tool?
Thank you for your post, Yangyxt! I want to let you know we have received your question. We'll get back to you if we have any updates or follow up questions.
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Thank you for pointing this out so we can make this change. We have added the necessary annotation to the tool so it will show up in the tool docs in the next release.
See this PR for more information: https://github.com/broadinstitute/gatk/pull/7871
You can also see the information that will eventually appear in the tool docs in the text of the tool: https://github.com/broadinstitute/gatk/blob/master/src/main/java/org/broadinstitute/hellbender/tools/walkers/sv/JointGermlineCNVSegmentation.java
Let me know if you have any other questions.
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