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Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Refseq accession number and version number in Funcotator

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    Genevieve Brandt (she/her)

    Thank you for your post, TMB! I want to let you know we have received your question and will be moving it to the Community Discussions -> General Discussion topic, as the Other topic is for reporting bugs and issues with GATK.

    We'll get back to you if we have any updates or follow up questions. Please see our Support Policy for more details about how we prioritize responding to questions. 

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    TMB

    Thank you so much for your comment. Do you have any updates on this topic? 

    Funcotator appears to give RefSeq ID to annotate variants but it lacks version numbers ( .x) 

    The funcotator resources version I used is: 

    Version: 1.7.20200429s

    Could someone help me find this information? 

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    Genevieve Brandt (she/her)

    TMB I don't have any updates yet, we're a bit behind getting through the posts because I was out sick last week. I'll let you know when we are able to take a look!

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    Genevieve Brandt (she/her)

    Hi TMB,

    All the version numbers for the built in data sources are written into the header. It's a long line in the header that has this information, starting with ##Funcotator Version=. Let me know if this is not what you were looking for.

    Best,

    Genevieve

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