Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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    Samantha (she/her)

    Hi Oliver Ruebenacker,

    Sorry for the delayed response. I've asked the WDL developers about this and they informed me that that comment is there as a disclaimer that the workflow hasn't been tested on hg19 because there is no hg19 config, but there is no fundamental reason why it can't work. 

    Best,

    Samantha

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