Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Fontconfig error in the newest gatk docker image


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    Genevieve Brandt (she/her)

    Hi SkyWarrior

    Thanks for updating us about this. Is it a fatal error? 

    We're having a hard time determining what would have caused this. It would be helpful to see the command and full program log for the tool where this occurred. Is this DetermineGermlineContigPloidy?

    Thanks for your help.



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