Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Can I know the progress of Haplotypecaller?

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    Genevieve Brandt (she/her)

    Hi JE S,

    I am going to move your post into our Community Discussions -> General Discussion topic, as the Other topic is for reporting bugs and issues with GATK.

    You can read more about our forum guidelines and the topics here: Forum Guidelines.

    Best,

    Genevieve

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    Genevieve Brandt (she/her)

    Hi JE S,

    HaplotypeCaller does not estimate the time remaining, but you can view the progress in the progress meter, which will appear in the standard output by the tool.

    Let me know if you have any further questions.

    Best,

    Genevieve

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