how to run "gatk-register"?Answered
I was installed GTAK using the following command: conda install -c bioconda gatk
Then, I just run the command$: gatk -version
Output is: GATK jar file not found. Have you run "gatk-register"?
How do I run the "gatk-register"?
Hi Mahendra Singh,
Are you running GATK4?
Here is our official recommendations for how to get GATK4 up and running on your machine: https://github.com/broadinstitute/gatk#requirements
Let me know if you have any other questions.
Thank you so much, Genevieve Brandt
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