how to run "gatk-register"?

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Mahendra Singh

• March 28, 2022 04:28

I was installed GTAK using the following command: conda install -c bioconda gatk

Then, I just run the command$: gatk -version

Output is: GATK jar file not found. Have you run "gatk-register"?

How do I run the "gatk-register"?

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  Genevieve Brandt (she/her)

  • April 06, 2022 21:44

  Hi Mahendra Singh,

  Are you running GATK4?

  Here is our official recommendations for how to get GATK4 up and running on your machine: https://github.com/broadinstitute/gatk#requirements

  Let me know if you have any other questions.

  Best,

  Genevieve

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  Mahendra Singh

  • April 16, 2022 03:18

  Thank you so much, Genevieve Brandt

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  Elena S Kim

  • June 20, 2024 19:19

  You can call gatk with putting the version, for instance,

  gatk-4.5.0.0/gatk 

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