Hi GATK team,
I notice that `FilterAlignmentArtifacts` is no longer part of the best practices when calling Mutect2. https://gatk.broadinstitute.org/hc/en-us/articles/360035531132--How-to-Call-somatic-mutations-using-GATK4-Mutect2
However, it looks like in the wdl, it's still calling it when providing the reference image. https://github.com/broadinstitute/gatk/blob/b14f810b91faf14d39e7e2810838e7bc55b73998/scripts/mutect2_wdl/mutect2.wdl#L332
I am curious why we remove `FilterAlignmentArtifacts` from the best practices, and if I was following the right wdl.
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