Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more



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    Genevieve Brandt (she/her)

    Hi Aziz,

    Unfortunately we do not support GATK3 anymore. Please upgrade to GATK4 and we will be happy to help with any error messages you come across!



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