Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Baserecalibarator error: half of the files worked without any error


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    Genevieve Brandt (she/her)

    Hi Huma Shehwana,

    The error message for this run can be found in the program log here:

    java.nio.file.FileSystemException: /DATA/General_Resources/DNAseq_databases_knownresources/Homo_sapiens_assembly38.dbsnp138.vcf.idx -> /tmp/spark-78d11971-b432-4342-8481-a2ac5daa8312/userFiles-3183fa15-760f-414c-a479-92f45293a294/Homo_sapiens_assembly38.dbsnp138.vcf.idx: No space left on device

    It looks like you are running out of disk space in your temporary directories. Hopefully this helps you to run the jobs successfully! Please let me know if you have further questions.



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