Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

ValidateSamFile Error


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    Genevieve Brandt (she/her)

    Hi Abrish,

    For your first command with Ubuntu 18, I don't see anything in the program log that indicated the command even ran. Could you send the complete program log for the GATK command with Ubuntu 18?

    I'm not able to provide any support for Ubuntu, but I can try to help figure out the GATK errors.



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