Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Where is my GATK4 ?


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    Genevieve Brandt (she/her)

    Hi MianQi,

    Thank you for writing into the forum! Let's see if we can get GATK working for you on Docker, since Docker is so convenient.

    Can you see if GATK docker works when you reference a specific GATK version? Here is how I normally use docker:

    docker pull broadinstitute/gatk:
    docker run -it broadinstitute/gatk:

    Let me know if this works and if you have any further questions!


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