Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

VariantsToTable positional argument eror


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    Pamela Bretscher

    Hi Owen Hudson,

    This type of error generally happens when you have some sort of type in your command that prevents the tool from reading it properly, such as extra or missing spaces. From the error message, it looks like you might have an extra space before your file arguments (-F and -O). Could you check the full command you ran for any errors?

    Kind regards,


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