Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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    Pamela Bretscher

    Hi Muhammad Shoaib Akhtar,

    Have you seen this document about GermlineCNVCaller and the difference between CASE and COHORT modes? I am going to move your post to the General Discussion topic as the Germline topic is for reporting bugs and issues with GATK.

    Kind regards,


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