Hello

I am trying to validate filtered vcf with truth data set. The truth data vcf file and filtered vcf files  have different headers which leads to the below error. The vcf files (filtered vcf data) has accession number instead of chromosome number (Chr) in the vcf header which results in the error "incompatible contigs". Please find the error message below. Is there a way to replace the chromosome number with accession number in the vcf files

A USER ERROR has occurred: Input files best available and features have incompatible contigs: No overlapping contigs found.
best available contigs = [NC_000001.11, NT_187361.1, NT_187362.1, NT_187363.1, NT_187364.1, NT_187365.1, NT_187366.1, NT_187367.1, NT_187368.1, NT_187369.1, NC_000002.12, NT_187370.1, NT_187371.1, NC_000003.12, NT_167215.1, NC_000004.12, NT_113793.3, NC_000005.10, NT_113948.1, NC_000006.12, NC_000007.14, NC_000008.11, NC_000009.12, NT_187372.1, NT_187373.1, NT_187374.1, NT_187375.1, NC_000010.11, NC_000011.10, NT_187376.1, NC_000012.12, NC_000013.11, NC_000014.9, NT_113796.3, NT_167219.1, NT_187377.1, NT_113888.1, NT_187378.1, NT_187379.1, NT_187380.1, NT_187381.1, NC_000015.10, NT_187382.1, NC_000016.10, NT_187383.1, NC_000017.11, NT_113930.2, NT_187384.1, NT_187385.1, NC_000018.10, NC_000019.10, NC_000020.11, NC_000021.9, NC_000022.11, NT_187386.1, NT_187387.1, NT_187388.1, NT_187389.1, NT_187390.1, NT_187391.1, NT_187392.1, NT_187393.1, NT_187394.1, NC_000023.11, NC_000024.10, NT_187395.1, NT_187396.1, NT_187397.1, NT_187398.1, NT_187399.1, NT_187400.1, NT_187401.1, NT_187402.1, NT_187403.1, NT_187404.1, NT_187405.1, NT_187406.1, NT_187407.1, NT_187408.1, NT_187409.1, NT_187410.1, NT_187411.1, NT_187412.1, NT_187413.1, NT_187414.1, NT_187415.1, NT_187416.1, NT_187417.1, NT_187418.1, NT_187419.1, NT_187420.1, NT_187421.1, NT_187422.1, NT_187423.1, NT_187424.1, NT_187425.1, NT_187426.1, NT_187427.1, NT_187428.1, NT_187429.1, NT_187430.1, NT_187431.1, NT_187432.1, NT_187433.1, NT_187434.1, NT_187435.1, NT_187436.1, NT_187437.1, NT_187438.1, NT_187439.1, NT_187440.1, NT_187441.1, NT_187442.1, NT_187443.1, NT_187444.1, NT_187445.1, NT_187446.1, NT_187447.1, NT_187448.1, NT_187449.1, NT_187450.1, NT_187451.1, NT_187452.1, NT_187453.1, NT_187454.1, NT_187455.1, NT_187456.1, NT_187457.1, NT_187458.1, NT_187459.1, NT_187460.1, NT_187461.1, NT_187462.1, NT_187463.1, NT_187464.1, NT_187465.1, NT_187466.1, NT_187467.1, NT_187468.1, NT_187469.1, NT_187470.1, NT_187471.1, NT_187472.1, NT_187473.1, NT_187474.1, NT_187475.1, NT_187476.1, NT_187477.1, NT_187478.1, NT_187479.1, NT_187480.1, NT_187481.1, NT_187482.1, NT_187483.1, NT_187484.1, NT_187485.1, NT_187486.1, NT_187487.1, NT_187488.1, NT_187489.1, NT_187490.1, NT_187491.1, NT_187492.1, NT_187493.1, NT_187494.1, NT_187495.1, NT_187496.1, NT_113901.1, NT_167213.1, NT_167214.1, NT_167218.1, NT_187497.1, NT_167220.1, NT_167208.1, NT_187498.1, NT_187499.1, NT_187500.1, NT_187501.1, NT_187502.1, NT_187503.1, NT_187504.1, NT_187505.1, NT_187506.1, NT_187508.1, NT_187509.1, NT_187510.1, NT_187511.1, NT_187512.1, NT_167209.1, NT_187513.1, NT_167211.2, NT_113889.1, NW_012132914.1, NW_015495298.1, NW_011332688.1, NW_014040926.1, NW_009646195.1, NW_018654706.1, NW_019805487.1, NW_009646194.1, NW_018654707.1, NW_014040925.1, NW_017852928.1, NW_009646196.1, NW_011332687.1, NW_018654708.1, NW_014040927.1, NW_021159988.1, NW_012132915.1, NW_018654709.1, NW_015495299.1, NW_018654710.1, NW_011332690.1, NW_021159987.1, NW_011332689.1, NW_017363813.1, NW_009646197.1, NW_012132916.1, NW_011332691.1, NW_021159989.1, NW_018654711.1, NW_012132917.1, NW_009646198.1, NW_019805491.1, NW_019805492.1, NW_019805490.1, NW_019805489.1, NW_019805488.1, NW_021159990.1, NW_021159993.1, NW_013171799.1, NW_021159992.1, NW_021159994.1, NW_021159991.1, NW_021159995.1, NW_013171800.1, NW_013171801.1, NW_017363814.1, NW_015495300.1, NW_015495301.1, NW_018654712.1, NW_009646199.1, NW_016107297.1, NW_021159996.1, NW_016107298.1, NW_018654713.1, NW_013171803.1, NW_012132918.1, NW_009646200.1, NW_013171802.1, NW_017363815.1, NW_021159997.1, NW_021159998.1, NW_019805493.1, NW_017852929.1, NW_017852930.1, NW_018654714.1, NW_018654715.1, NW_012132919.1, NW_018654717.1, NW_017852932.1, NW_017852931.1, NW_019805494.1, NW_018654716.1, NW_013171804.1, NW_013171805.1, NW_009646201.1, NW_021159999.1, NW_021160000.1, NW_011332694.1, NW_021160001.1, NW_013171806.1, NW_009646202.1, NW_013171807.1, NW_011332693.1, NW_011332692.1, NW_015148966.1, NW_021160004.1, NW_011332695.1, NW_021160006.1, NW_019805496.1, NW_019805495.1, NW_017363816.1, NW_019805498.1, NW_021160005.1, NW_021160003.1, NW_019805497.1, NW_013171808.1, NW_021160002.1, NW_009646203.1, NW_013171809.1, NW_018654718.1, NW_021160008.1, NW_011332696.1, NW_009646204.1, NW_018654720.1, NW_015148967.1, NW_018654719.1, NW_011332697.1, NW_019805499.1, NW_021160007.1, NW_021160012.1, NW_011332699.1, NW_013171810.1, NW_021160009.1, NW_009646205.1, NW_011332700.1, NW_013171811.1, NW_021160010.1, NW_021160011.1, NW_011332698.1, NW_021160013.1, NW_018654722.1, NW_021160014.1, NW_018654721.1, NW_011332701.1, NW_021160018.1, NW_021160017.1, NW_012132920.1, NW_021160016.1, NW_021160015.1, NW_013171812.1, NW_019805500.1, NW_017852933.1, NW_021160019.1, NW_013171813.1, NW_018654723.1, NW_012132921.1, NW_017363817.1, NW_021160020.1, NW_016107299.1, NW_017363819.1, NW_017363818.1, NW_019805501.1, NW_021160021.1, NW_019805503.1, NW_014040928.1, NW_019805502.1, NW_013171814.1, NW_018654724.1, NW_021160022.1, NW_014040929.1, NW_009646206.1, NW_016107300.1, NW_016107301.1, NW_016107302.1, NW_016107303.1, NW_016107304.1, NW_016107305.1, NW_016107306.1, NW_016107307.1, NW_016107308.1, NW_016107309.1, NW_016107310.1, NW_016107311.1, NW_016107313.1, NW_016107314.1, NW_016107312.1, NW_021160023.1, NW_021160026.1, NW_021160024.1, NW_009646207.1, NW_014040930.1, NW_014040931.1, NW_009646208.1, NW_015148968.1, NW_021160025.1, NW_015148969.1, NW_017363820.1, NW_021160031.1, NW_021160028.1, NW_021160029.1, NW_021160027.1, NW_021160030.1, NW_018654725.1, NW_018654726.1, NW_009646209.1, NT_187515.1, NT_187517.1, NT_187514.1, NT_187520.1, NW_003315905.1, NW_003315906.1, NW_003315907.2, NT_187521.1, NT_187519.1, NT_187516.1, NT_187518.1, NT_187525.1, NT_187526.1, NT_187529.1, NT_187522.1, NW_003315908.1, NT_187524.1, NT_187531.1, NT_187530.1, NT_187528.1, NW_003571033.2, NW_003315909.1, NT_187527.1, NT_187523.1, NW_003871060.2, NT_187535.1, NT_187537.1, NW_003315913.1, NT_187533.1, NT_187536.1, NT_187538.1, NT_187532.1, NT_187534.1, NT_187539.1, NT_187540.1, NW_003315915.1, NT_187541.1, NT_167250.2, NT_187544.1, NW_003315914.1, NT_187542.1, NT_187545.1, NT_187543.1, NT_187550.1, NT_187548.1, NT_187547.1, NW_003315920.1, NW_003571036.1, NT_187551.1, NW_003315917.2, NW_003315918.1, NT_187549.1, NW_003315919.1, NT_187546.1, NT_167244.2, NT_187555.1, NT_187554.1, NW_003315921.1, NT_187556.1, NT_187557.1, NW_004166862.2, NT_187552.1, NT_187553.1, NT_187558.1, NT_187561.1, NT_187559.1, NW_003315922.2, NT_187562.1, NT_187564.1, NT_187563.1, NT_187560.1, NT_187572.1, NT_187568.1, NT_187565.1, NT_187576.1, NT_187570.1, NT_187577.1, NT_187566.1, NT_187567.1, NT_187574.1, NT_187575.1, NT_187573.1, NT_187571.1, NT_187569.1, NW_003315928.1, NW_003315929.1, NW_003315930.1, NW_003315931.1, NT_187578.1, NW_003315934.1, NT_187579.1, NW_003315935.1, NT_187580.1, NT_187586.1, NT_187584.1, NT_187585.1, NT_187583.1, NW_003315936.1, NW_003871073.1, NW_003871074.1, NT_187582.1, NT_187581.1, NW_003571049.1, NW_003571050.1, NT_187588.1, NW_003315938.1, NT_187587.1, NW_003315939.2, NW_003315941.1, NW_003315942.2, NT_187590.1, NW_003315940.1, NT_187589.1, NT_187591.1, NT_187594.1, NT_187593.1, NT_187597.1, NT_187595.1, NT_187592.1, NT_187596.1, NT_187598.1, NT_187601.1, NT_187599.1, NT_187600.1, NT_187602.1, NT_187604.1, NT_187603.1, NW_003315943.1, NT_187605.1, NW_003315944.2, NT_187606.1, NT_187610.1, NT_187609.1, NT_187608.1, NT_187607.1, NW_003315945.1, NW_003315946.1, NW_003315952.3, NT_187613.1, NT_187611.1, NT_187614.1, NW_003871091.1, NW_003871092.1, NW_003315953.2, NT_167251.2, NW_003315954.1, NT_187615.1, NT_187616.1, NW_003315955.1, NT_187612.1, NT_187618.1, NW_003315956.1, NW_003315959.1, NW_003315960.1, NW_003315957.1, NW_003315958.1, NW_003315961.1, NT_187617.1, NT_187622.1, NT_187621.1, NW_003315962.1, NW_003315964.2, NW_003315965.1, NW_003315963.1, NT_187619.1, NT_187620.1, NW_003571054.1, NW_003315966.2, NT_187623.1, NT_187625.1, NT_187624.1, NW_003315967.2, NT_187628.1, NT_187627.1, NW_003315968.2, NW_003315969.2, NW_003315970.2, NT_187626.1, NT_187629.1, NT_187632.1, NT_187633.1, NT_187630.1, NT_187631.1, NW_003315972.2, NW_003315971.2, NT_187634.1, NT_187635.1, NT_187646.1, NT_187648.1, NT_187647.1, NT_187649.1, NT_187650.1, NT_187651.1, NT_187652.1, NT_113891.3, NT_187653.1, NT_187655.1, NT_187654.1, NT_187656.1, NT_187657.1, NT_187658.1, NT_187659.1, NT_187660.1, NT_187662.1, NT_187664.1, NT_187661.1, NW_003871093.1, NT_187663.1, NT_187665.1, NT_187666.1, NW_003571055.2, NW_004504305.1, NT_187667.1, NT_187678.1, NT_187679.1, NT_167245.2, NT_187680.1, NT_187681.1, NW_003571056.2, NT_187682.1, NT_187688.1, NT_167246.2, NW_003571057.2, NT_187689.1, NT_167247.2, NW_003571058.2, NT_187690.1, NT_167248.2, NW_003571059.2, NT_187691.1, NT_167249.2, NW_003571060.1, NT_187692.1, NW_003571061.2, NT_187693.1, NT_187636.1, NT_187637.1, NT_187638.1, NT_187639.1, NT_187640.1, NT_187641.1, NT_187642.1, NT_187643.1, NT_187644.1, NT_187645.1, NT_187668.1, NT_187669.1, NT_187670.1, NT_187671.1, NT_187672.1, NT_187673.1, NT_187674.1, NT_187675.1, NT_187676.1, NT_187677.1, NT_187683.1, NT_187684.1, NT_187685.1, NT_187686.1, NT_187687.1, NT_113949.2, NC_012920.1]
features contigs = [chr1, chr2, chr3, chr4, chr5, chr6, chr7, chr8, chr9, chr10, chr11, chr12, chr13, chr14, chr15, chr16, chr17, chr18, chr19, chr20, chr21, chr22, chrX]

Thanks