This is a general question about the inner-working of sortVCF from a newbie. Ordering the records by position is straightforward, but there seem to be quiet a few rearrangements happening in the header and the INFO column. I could not find any other documentation aside from:
- How is the order in the header decided?
- Which INFO fields are converted? Anything aside from the reserved sub-fields from the VCF specification?
- Is there a list of how fields are converted?
I apologise if I missed any documentation, please just point me there.
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