I try to analyze a trio sample (mother, father, son) so I used the following pipeline "Calling variants on cohorts of samples using the HaplotypeCaller in GVCF mode" then I did variant recalibration. Now I need to filter my variants using the condition allele balance but I can't find it in my vcf . I think that GATK gatk4-220.127.116.11 doesn't calculate this parameter anymore but for me is very important to filter my variants using this condition.
What can I do ? any suggestion?
Thanks a lot,
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