In the documentation for Genomicsdbimport it is stated that the tool is designed for diploids. I used it, however, for my tetraploid (4n) samples, it ran successfully. I then used the outputs for GenotypeGVCF and this tool is also producing the VCF files successfully.
I was wondering, given the successful run, can I trust the output or should I be worried for errors in my output since Genomicsdbimport is designed for diploids?
I'm using GATK version GATK/220.127.116.11
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