Hello GATK community,
I am running:
java -jar picard.2.26.3.jar MarkDuplicates I=input.coordsorted.bam O=output.markduplicates.bam M=metrics.txt TAG_DUPLICATE_SET_MEMBERS=true
To get a DI tag associated to each duplicate (I want to know which duplicates originate from the same molecule, including the primary duplicate).
I cannot find the DI tag (nor the DS tag) in the output.bam. Picard does not return any error message.
ValidateSamFile confirm that the input has no error.
Anyone knows why the DI tag is not present or how I could get it?
Please sign in to leave a comment.