Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

run into PythonScriptExecutorException when executing PostprocessGermlineCNVCalls about positional arguments


1 comment

  • Avatar
    Pamela Bretscher

    Hi Yangyxt,

    It looks like this is most likely an issue with the python code. I am creating a Github ticket so that the GATK developers on the CNV team can look further into this error and determine what can be done. You can follow the progress of the ticket here.

    Kind regards,


    Comment actions Permalink

Please sign in to leave a comment.

Powered by Zendesk