Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Where do I find resources for using FilterVariantTranches with CNN_2D/CNN_1D scores?


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    Genevieve Brandt (she/her)

    Hi Rodrigo Cabrera,

    The files don't need to be scored for CNN_1D or CNN_2D to be used as resources with FilterVariantTranches. They are just supposed to be known sites files.



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