Hi Can you please point me to the chain file for human_g1k_v37_decoy to hg19 conversion

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smk_84

• July 06, 2021 20:48
• Edited

Hi,

I need to liftover coordinates from human_g1k_v37_decoy to hg19. I can't seem to find the chain file for the same in the gatk resource bundle. Can you please point me to it if it is available somewhere?

Thanks & regards

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  Pamela Bretscher

  • July 16, 2021 14:44

  Hi smk_84,

  The available chain files that are offered by GATK can be found at this link:

  https://github.com/broadgsa/gatk/tree/master/public/chainFiles

  Kind regards,

  Pamela

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