looking for panel of normals and allele frequency for hg19 genome build

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elhadi iich

• June 30, 2021 09:47

hi all

trying to run Mutect2 using hg19 reference genome but can't find the panel of normal and allele frequency germline-resource for that build. Anyone knows where I can find them?

regards

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  Genevieve Brandt (she/her)

  • July 14, 2021 16:19

  Hi elhadi iich,

  Thanks for writing into our forum! All our resources are listed in our resource bundle page. There are some hg19 resources on the ftp site and some within the google cloud buckets. You can use gsutils or the google cloud console to view and download the gcp data. Hope you can find what you need!

  Best,

  Genevieve

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