Docker image for GATK3 version 3.7

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Tatyana Zhuravleva

• June 27, 2021 01:29

If you are seeing an error, please provide(REQUIRED) :
a) GATK version used: NA; trying to download version 3.7 docker
b) Exact command used:

docker pull broadinstitute/gatk3

c) Entire error log:

Using default tag: latest

Error response from daemon: manifest for broadinstitute/gatk3:latest not found: manifest unknown: manifest unknown

ALSO:

sudo docker pull broadinstitute/gatk3:3.7.0       

Error response from daemon: manifest for broadinstitute/gatk3:3.7.0 not found: manifest unknown: manifest unknown

Several other combinations had the same error.

 

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• 

  Genevieve Brandt (she/her)

  • June 28, 2021 18:03

  Hi Tatyana Zhuravleva,

  I am going to move your post into our Community Discussions -> General Discussion topic, as the Other topic is for reporting bugs and issues with GATK.

  You can read more about our forum guidelines and the topics here: Forum Guidelines.

  Best,

  Genevieve

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  Pamela Bretscher

  • June 28, 2021 18:45

  Hi Tatyana Zhuravleva,

  Did you try: 

  docker pull broadinstitute/gatk3:3.7-0

  This is the command given at this link to the GATK3 official docker: https://hub.docker.com/r/broadinstitute/gatk3/tags?page=1&ordering=last_updated

  Please let me know if this does not work.

  Kind regards,

  Pamela

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