Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

MuTect2 Mismatch between the reference haplotype and the reference assembly graph path.

Answered
0

1 comment

  • Avatar
    Genevieve Brandt (she/her)

    Hi Heejun Jang,

    Could you try updating your GATK version since we have done some bug fixing with Mutect2 since 4.1.4.0? We are currently on 4.2.0.0 and so far it has been a great release without many issues!

    Best,

    Genevieve

    0
    Comment actions Permalink

Please sign in to leave a comment.

Powered by Zendesk