Dear Bob Handsaker
When running SVpreprocess for each sample, I used the option "-L chr.list" to exclude many jobs on scaffolds, as the number of scaffolds is greater than the number of chromosomes. However, I found that the sample_gender.report.txt did not contain the gender information when using the option "-L", it only contains the header (like following). I am curious whether this will affect the follow-up analysis.
SAMPLE DOSAGE_X DOSAGE_Y KARYOTYPE GENDER
Please sign in to leave a comment.