CreateSomaticPanelOfNormals BETA tag

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G E

• April 01, 2021 19:38

Hi, In GATK 4.2.0.0:

1) What is the meaning of the BETA tag in the CreateSomaticPanelOfNormals output VCF file?

2) Is this BETA tag used by Mutect2?

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  Genevieve Brandt (she/her)

  • April 02, 2021 15:05

  Hi G E,

  I am going to move your post into our Community Discussions -> Documentation Questions topic, as the Somatic topic is for reporting bugs and issues with GATK.

  You can read more about our forum guidelines and the topics here: Forum Guidelines.

  Best,

  Genevieve

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  Genevieve Brandt (she/her)

  • April 12, 2021 21:02

  Hi G E,

  I confirmed with our developers that CreateSomaticPanelofNormals is no longer in BETA, the results from the tool have been fully tested.

  The BETA tag does not affect Mutect2.

  Genevieve

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