Funcotator table format
Is it possible to use Funcotator for germline calls but format the output in a table format instead of a VCF? I understand that MAF isn't yet available for germline Funcotator, but is there any other way to convert the VCF output into a table format?
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Hi vctrymao,
Please see the tool docs for Funcotator, MAF format is available but unsupported. So, you could try it anyway.
I am not sure if it would work, but you could also check out the VariantsToTable GATK Tool to convert your VCF to a table.
Best,
Genevieve
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