Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

BaseRecalibrator on MT .bam files

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    Bhanu Gandham

    Sharon Cox

    If you see "Tool returned: SUCCESS" at the bottom of the log and you get an output, then the tool ran just fine. The progress meter is only giving you some info on what the tool encounters while processing the data. You can ignore most of that. That info is provided for when the tool fails and we need to figure out at what point the failure happened.

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