Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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    Genevieve Brandt (she/her)

    Hello,

    We do not have any information or best practices at the moment regarding ATAC-seq data. We do take feedback from the community and grow our best practices to cover usages that will help out GATK community members. 

    Please let us know what you find using GATK with this data. And if you post more specific questions, we can try to find solutions to questions as capacity allows. In addition, feel free to engage with other users on our forum regarding this use case of GATK and if it is a popular topic, we will look more into it.

    Best,

    Genevieve

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