If you are seeing an error, please provide(REQUIRED) :
a) GATK version used: 188.8.131.52
b) Exact command used: BaseRecalibrator and ApplyBQSR
c) Entire error log: None
If not an error, choose a category for your question(REQUIRED):
a)How do I (......)?
b) What does (......) mean?
c) Why do I see (......)?
d) Where do I find (human truth set VCF files to be used in BQSR step that is recommended by GATK4 team? Is there a webpage which I can access to download them)?
e) Will (......) be in future releases?
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