Broad hg19 TWIST interval list
Answered
If you are seeing an error, please provide(REQUIRED) :
a) GATK version used: 4.1.8.1
b) Exact command used: GATK Somatic CNV workflows, GATK Somatic SNV workflows
I am performing analysis on WES data sequenced at the Broad using the TWIST panel and was looking for interval lists that can be used with this data. I checked the buckets mentioned in the Broad Resource Bundle (https://gatk.broadinstitute.org/hc/en-us/articles/360035890811-Resource-bundle) and do not see any information about TWIST data.
Could you please point me to the correct location to access this resource?
Thank you,
Tejas
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Hello,
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Hi Tejas Jammihal,
The only resources that I can point to are the ones in the resource bundle where you already checked. Were you able to find what you were looking for since you posted?
You may want to reach out to the Broad sequencing group that you used to get this file.
Best,
Genevieve
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You can find the interval list for Twist products from their website.
Here is the link to the resources, but you may have to create an account (which is free) to access:
https://www.twistbioscience.com/resources/technical-resources
Click '.bed' under the 'resource types' tab on the right, and you can download the .bed files for interval lists. Then you can use tools such as BedToIntervalList to convert it to an interval list.
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Thank you for posting the link Marissa Kamarck!
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