Any documents for 199 columns in Funcotator output?
GATK version 4 Funcotator
I got 199 columns in output. Is there any document to explain these columns?
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Hi Haiying Kong,
Please see our funcotator resources for more information about the columns: https://gatk.broadinstitute.org/hc/en-us/articles/360035889931-Funcotator-Information-and-Tutorial#1.3.2.1
As well as this document about the annotation specifications: https://gatk.broadinstitute.org/hc/en-us/articles/360035531732
The Gencode annotations are required so our best documentation is regarding those annotations.
If you have looked through all that information and still have questions, please let us know and we will put in a request with our documentation team to improve those aspects.
Genevieve
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