How do I rename output folder created using glob (WDL-Cromwell)?

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Mar Quiroga

• November 25, 2020 23:20

I made a wdl task for fastqc that outputs the zip files, of which there will be as many as reads that the sample I'm working on at that moment has. We create the output using glob:

  output {
    Array[File] fastqcArray = glob("*.zip")
  } 

I would like to give the folder a name that is representative of what it contains, for example `fastqc`, rather than glob-xxxxxxx, so that it's clear what it is in my task's output folder. Is this possible, and if so, how can I achieve it?

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• 

  Genevieve Brandt (she/her)

  • November 30, 2020 23:49
  • Edited

  Hi Mar Quiroga, our GATK support team is focused on GATK specific questions and questions regarding GATK abnormal results. Here is our support policy for more information. You can leave this post here in case other users can provide insight and you can also check out these resources for more information:

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