I have analyzed some samples by running GATK GenotypeGVCF v18.104.22.168. The output VCF contains the following format field `GT:AD:DP:GQ:PL` for each sample. As you can see, there is no AF field for each sample. AF exist in INFO field globally for the variant, with no specification of the specific AF in each sample.
Would it be okay to divide AD / DP for each specific sample, in order to get AF for each one of the samples?
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