What is the training data for the model - based filters?Answered
a)How do I (......)?
This question was answered during our live webinar. The answer is copied below for posterity.
A: Each of the model based filters uses the data you provide to M2 and FilterMutectCalls. As an example, the read orientation filters use statistics collected from LearnReadOrientationModel. These statistics are plugged into a model that is then used to filter variants.
We don’t use a training set that explicitly labels true and false variants.
- Mark Fleharty
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