Hey, I've been trying to run wdl file (https://github.com/gatk-workflows/gatk4-somatic-snvs-indels/blob/master/mutect2_pon.wdl) for the Create somatic panel of normals workflow with the Cromwell executor. The input files for the workflow, as well as json and wdl file are present on the AWS instance from which I tried to run the Cromwell (version 53.1). The error message I got is:
Could not localize /mnt/.../Projects/.../Inputs/HG19_Broad_variant.fasta -> /home/.../cromwell-executions/Mutect2_Panel/.../call-Mutect2/shard-0/Mutect2/.../call-SplitIntervals/inputs/-.../HG19_Broad_variant.fasta:
/mnt/.../Inputs/HG19_Broad_variant.fasta doesn't exist
/mnt/.../Inputs/HG19_Broad_variant.fasta: Invalid cross-device link
/mnt/..../Inputs/HG19_Broad_variant.fasta -> /home/.../cromwell-executions/Mutect2_Panel/..../call-Mutect2/shard-0/Mutect2/0.../call-SplitIntervals/inputs/.../HG19_Broad_variant.fasta.tmp: No space left on device.
Fasta file (and it's indexes) is present on instance and it is listed in input json file. There is enough memory and space on the AWS instance.
Do you maybe have idea what could be an issue?
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