How do I merge f1r2.tar.gz files when parallelizing Mutect2 pipeline?
I am running the following snakemake command line using GATK 220.127.116.11 version:
Jenifer This has been discussed previously on the forum: https://gatk.broadinstitute.org/hc/en-us/community/posts/360060460131-GATK4-Parallelizing-genotypegvcfs
If you have questions about GATK and Mutect2, check out our webinar event happening on November 17th! We encourage you to post your questions and topic requests before the event so we can answer as many questions as possible during the event. There is a new topic on the forum just for the Webinar, hope you join in!
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