Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

The Future of CNN Tools

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    Genevieve Brandt

    Hi micknudsen, thank you for posting. I will look into this and let you know when I have more information.

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    Genevieve Brandt

    Hi micknudsen, the reason why CNNVariantTrain and CNNVariantWriteTensors are marked as experimental is that they have not been thoroughly code tested. The plan is for them eventually to be out of beta/experimental and they are not at risk of being removed from GATK. 

    The experimental disclaimer for these tools is because they need better testing and documentation. So, as you use these tools, you may come across some bugs, and you will want to check your results.

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