Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

error while running gatk GenotypeConcordance



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    Genevieve Brandt (she/her)

    Ana Marija is this same error that you previously posted?

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    Ana Marija

    the another one was using:

    java -jar picard.jar GenotypeConcordance CALL_VCF=new.vcf.gz CALL_SAMPLE=0_fam0110_G110 O=gc_concordance.vcf TRUTH_VCF=old.vcf.gz TRUTH_SAMPLE=0_fam0110_G110


    but the same error

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