problem with docker image for Copy Number Alterations tutorial
Moving this topic here from GitHub, as requested by droazen (https://github.com/broadinstitute/gatk/issues/6836#issuecomment-696282962)
Basically, I would like to use the docker image mentioned in (How to part I): Sensitively detect copy ratio alterations and allelic segments, but it appears that the image is no longer there.
If you are seeing an error, please provide(REQUIRED) :
a) GATK version used:
NA; trying to use Docker
b) Exact command used:
docker pull spacecade7/tutorial_11682_11683
c) Entire error log:
Using default tag: latest
Error response from daemon: manifest for spacecade7/tutorial_11682_11683:latest not found: manifest unknown: manifest unknown
Hello Tatyana Zhuravleva, it looks like docker is trying to use the tag "latest" when you do not specify a tag, which is nonexistent for that docker image.
The correct way to get the docker image is:
docker pull spacecade7/tutorial_11682_11683:gatk188.8.131.52
Thanks for bringing this to our attention, I will also reach out to our documentation team to make the tutorial more clear.
Thank you, the clarified way works!
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