I am trying to use call somatic CNVs from WGS data obtained from a tumor sample (I don't have healthy tissue or control sample) from a patient. I found this workflow: https://gatk.broadinstitute.org/hc/en-us/articles/360035535892-Somatic-copy-number-variant-discovery-CNVs- . However, I couldn't find the actual commands how to run it. Is there a detailed tutorial or document for this?
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