FuncotatorDataSourceDownloader does not download latest version?

Follow

A. Brink

• September 10, 2020 13:50

If not an error, choose a category for your question(REQUIRED):
a)How do I download the latest version of Funcotator sources using FuncotatorDataSourceDownloader ?

When using the following command using GATK 4.1.8.1 ".gatk FuncotatorDataSourceDownloader --somatic --validate-integrity --extract-after-download" it seems to download version 1.6 of the sources. However, on ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/funcotator/ there seems a version 1.7 available. Why is this version not download using FuncotatorDataSourceDownloader. 

0

• 

  Genevieve Brandt (she/her)

  • September 10, 2020 21:32

  Hello A. Brink, Funcotator with GATK 4.1.8.1 is not compatible with the 1.7 dataset. Please use 1.6 until GATK 4.1.9.0 is released. Here is more info: https://gatk.broadinstitute.org/hc/en-us/community/posts/360072132411-Funcotator-datasources-v1-7-gencode-raise-error

  0

  Comment actions Permalink

Please sign in to leave a comment.