FuncotatorDataSourceDownloader does not download latest version?
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a)How do I download the latest version of Funcotator sources using FuncotatorDataSourceDownloader ?
When using the following command using GATK 4.1.8.1 ".gatk FuncotatorDataSourceDownloader --somatic --validate-integrity --extract-after-download" it seems to download version 1.6 of the sources. However, on ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/funcotator/ there seems a version 1.7 available. Why is this version not download using FuncotatorDataSourceDownloader.
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Hello A. Brink, Funcotator with GATK 4.1.8.1 is not compatible with the 1.7 dataset. Please use 1.6 until GATK 4.1.9.0 is released. Here is more info: https://gatk.broadinstitute.org/hc/en-us/community/posts/360072132411-Funcotator-datasources-v1-7-gencode-raise-error
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