ASEReadCounter count each read only once or not
d) Where do I find (......)?
I am simply using ASEReadCounter to count the ASE according to SNP sites. Some SNPs could be quite close to each other, so some reads may contain multiple SNPs. Does the software count these reads repeatedly or each read are only used once? Many thanks for the help.
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Hi Qingnan Liang, the GATK support team is focused on resolving questions about GATK tool-specific errors and abnormal results from the tools. For all other questions, such as this one, we are building a backlog to work through when we have the capacity.
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