ASEReadCounter count each read only once or not

September 02, 2020 00:38

d) Where do I find (......)?

I am simply using ASEReadCounter to count the ASE according to SNP sites. Some SNPs could be quite close to each other, so some reads may contain multiple SNPs. Does the software count these reads repeatedly or each read are only used once? Many thanks for the help.

1 comment

Genevieve Brandt

September 03, 2020 20:46
Hi Qingnan Liang, the GATK support team is focused on resolving questions about GATK tool-specific errors and abnormal results from the tools. For all other questions, such as this one, we are building a backlog to work through when we have the capacity.

Please continue to post your questions because we will be mining them for improvements to documentation, resources, and tools.

We cannot guarantee a reply, however, we ask other community members to help out if you know the answer.

For context, check out our support policy.
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