Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

CombineVariants set attribute filters on all callers explicitly (not with filteredInAll)

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    Genevieve Brandt

    Hello jorgez, our GATK support team does not support GATK 3 anymore. We recommend using GATK4 because of the many improvements! See this link for getting started.

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