Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

GenotypeGVCFs stops halfway through scaffold - java.lang.NullPointerException


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    Genevieve Brandt

    Hi Peter Euclide, could you please post your complete commands that have this issue, along with your complete stack trace and GATK version?

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