Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

GenotypeGVCFs stops halfway through scaffold - java.lang.NullPointerException

0

1 comment

  • Avatar
    Genevieve Brandt

    Hi Peter Euclide, could you please post your complete commands that have this issue, along with your complete stack trace and GATK version?

    0
    Comment actions Permalink

Please sign in to leave a comment.

Powered by Zendesk