I am trying to run SplitNCigarReads on RNA-Seq BAM files generated from STAR and put through picard MarkDuplicates. I used picard AddOrReplaceReadGroups to add read group information to the deduped BAM. I check the BAM file with picard ValidateSamFile again and the only warning I have is WARNING:MISSING_TAG_NM. I am using GATK v4.1.6.0-2-gcbbbb7a-SNAPSHOT and the command and error log are shown below. I thought increasing the amount of RAM and reads in memory would help, but it didn't seem to make much of a difference. I still see the same error.

Command:

/opt/gatk/gatk --java-options "-Xms60g -Xmx100G" SplitNCigarReads -R /home/kjngo/software/Reference_Genomes/STAR_indices_overhang75_hg38/GrCh38-genome.fa -I 1-2_S28_marked_duplicates_RG.bam -O 1-2_S28_marked_duplicates_splitNCigarReads.bam --max-reads-in-memory 2000000

Log:

Using GATK jar /opt/gatk/build/libs/gatk-package-4.1.6.0-2-gcbbbb7a-SNAPSHOT-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xms60g -Xmx100G -jar /opt/gatk/build/libs/gatk-package-4.1.6.0-2-gcbbbb7a-SNAPSHOT-local.jar SplitNCigarReads -R /home/kjngo/software/Reference_Genomes/STAR_indices_overhang75_hg38/GrCh38-genome.fa -I 1-2_S28_marked_duplicates_RG.bam -O 1-2_S28_marked_duplicates_splitNCigarReads.bam --max-reads-in-memory 2000000
22:37:38.541 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/opt/gatk/build/libs/gatk-package-4.1.6.0-2-gcbbbb7a-SNAPSHOT-local.jar!/com/intel/gkl/native/libgkl_compression.so
Aug 26, 2020 10:37:38 PM shaded.cloud_nio.com.google.auth.oauth2.ComputeEngineCredentials runningOnComputeEngine
INFO: Failed to detect whether we are running on Google Compute Engine.
22:37:38.796 INFO SplitNCigarReads - ------------------------------------------------------------
22:37:38.796 INFO SplitNCigarReads - The Genome Analysis Toolkit (GATK) v4.1.6.0-2-gcbbbb7a-SNAPSHOT
22:37:38.796 INFO SplitNCigarReads - For support and documentation go to https://software.broadinstitute.org/gatk/
22:37:38.797 INFO SplitNCigarReads - Executing as kjngo@###  on Linux v4.15.0-112-generic amd64
22:37:38.797 INFO SplitNCigarReads - Java runtime: OpenJDK 64-Bit Server VM v1.8.0_265-8u265-b01-0ubuntu2~18.04-b01
22:37:38.797 INFO SplitNCigarReads - Start Date/Time: August 26, 2020 10:37:38 PM PDT
22:37:38.797 INFO SplitNCigarReads - ------------------------------------------------------------
22:37:38.797 INFO SplitNCigarReads - ------------------------------------------------------------
22:37:38.798 INFO SplitNCigarReads - HTSJDK Version: 2.21.2
22:37:38.798 INFO SplitNCigarReads - Picard Version: 2.21.9
22:37:38.798 INFO SplitNCigarReads - HTSJDK Defaults.COMPRESSION_LEVEL : 2
22:37:38.798 INFO SplitNCigarReads - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
22:37:38.798 INFO SplitNCigarReads - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
22:37:38.798 INFO SplitNCigarReads - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
22:37:38.798 INFO SplitNCigarReads - Deflater: IntelDeflater
22:37:38.798 INFO SplitNCigarReads - Inflater: IntelInflater
22:37:38.798 INFO SplitNCigarReads - GCS max retries/reopens: 20
22:37:38.798 INFO SplitNCigarReads - Requester pays: disabled
22:37:38.798 INFO SplitNCigarReads - Initializing engine
22:37:39.093 INFO SplitNCigarReads - Done initializing engine
22:37:39.128 INFO ProgressMeter - Starting traversal
22:37:39.128 INFO ProgressMeter - Current Locus Elapsed Minutes Reads Processed Reads/Minute
22:37:49.219 INFO ProgressMeter - chr1:6269805 0.2 388000 2307234.9
22:37:59.227 INFO ProgressMeter - chr1:11786841 0.3 562000 1677695.4
22:38:09.268 INFO ProgressMeter - chr1:16575376 0.5 725000 1443264.8
22:38:19.274 INFO ProgressMeter - chr1:21219730 0.7 890000 1330145.0
22:38:29.302 INFO ProgressMeter - chr1:24531817 0.8 1037000 1240084.5
22:38:39.326 INFO ProgressMeter - chr1:26781521 1.0 1188000 1184092.5
22:38:49.367 INFO ProgressMeter - chr1:28606828 1.2 1330000 1136121.0
22:38:59.482 INFO ProgressMeter - chr1:32193214 1.3 1540000 1149911.6
22:39:09.484 INFO ProgressMeter - chr1:35533565 1.5 1662000 1103634.5
22:39:19.487 INFO ProgressMeter - chr1:36475902 1.7 1787000 1068375.2
22:39:29.543 INFO ProgressMeter - chr1:39237906 1.8 1847000 1003677.1
22:39:39.571 INFO ProgressMeter - chr1:40397681 2.0 1985000 988849.5
22:39:49.632 INFO ProgressMeter - chr1:43393529 2.2 2144000 985716.9
22:39:59.718 INFO ProgressMeter - chr1:46342772 2.3 2227000 950430.0
22:40:09.818 INFO ProgressMeter - chr1:52358374 2.5 2357000 938489.2
22:40:19.864 INFO ProgressMeter - chr1:55154496 2.7 2450000 914548.8
22:40:29.924 INFO ProgressMeter - chr1:64851837 2.8 2555000 897562.0
22:40:40.706 INFO ProgressMeter - chr1:67424237 3.0 2676000 884253.0
22:40:50.735 INFO ProgressMeter - chr1:84208508 3.2 2819000 882744.4
22:41:00.741 INFO ProgressMeter - chr1:89260093 3.4 2992000 890418.8
22:41:10.778 INFO ProgressMeter - chr1:97374235 3.5 3262000 924738.6
22:41:20.800 INFO ProgressMeter - chr1:107756145 3.7 3464000 937605.7
22:41:30.928 INFO ProgressMeter - chr1:110406321 3.9 3584000 927696.3
22:41:41.010 INFO ProgressMeter - chr1:112586295 4.0 3709000 920039.2
22:41:51.040 INFO ProgressMeter - chr1:116527710 4.2 3848000 916510.5
22:42:01.085 INFO ProgressMeter - chr1:120270031 4.4 4073000 932904.8
22:42:11.111 INFO ProgressMeter - chr1:120841657 4.5 4231000 933370.6
22:42:21.125 INFO ProgressMeter - chr1:145036554 4.7 4438000 944268.7
22:42:34.523 INFO ProgressMeter - chr1:145992882 4.9 4572000 928658.0
22:42:44.548 INFO ProgressMeter - chr1:146351250 5.1 4776000 938249.0
22:42:54.584 INFO ProgressMeter - chr1:148773179 5.3 4992000 949482.7
22:43:04.594 INFO ProgressMeter - chr1:149666097 5.4 5204000 959365.8
22:43:14.607 INFO ProgressMeter - chr1:150578251 5.6 5342000 955410.0
22:43:24.665 INFO ProgressMeter - chr1:151365772 5.8 5495000 954167.0
22:43:34.725 INFO ProgressMeter - chr1:151982967 5.9 5527000 932572.5
22:43:44.767 INFO ProgressMeter - chr1:154251107 6.1 5684000 932723.3
22:43:54.777 INFO ProgressMeter - chr1:155481709 6.3 5803000 926875.9
22:44:04.816 INFO ProgressMeter - chr1:156959126 6.4 5914000 920020.6
22:44:14.869 INFO ProgressMeter - chr1:158999931 6.6 6050000 917266.6
22:44:24.959 INFO ProgressMeter - chr1:160996477 6.8 6216000 919003.2
22:44:41.641 INFO ProgressMeter - chr1:161589598 7.0 6376000 905439.6
22:44:51.673 INFO ProgressMeter - chr1:167634190 7.2 6629000 919534.4
22:45:01.711 INFO ProgressMeter - chr1:171512179 7.4 6785000 919829.5
22:45:11.719 INFO ProgressMeter - chr1:174845180 7.5 6944000 920566.3
22:45:21.725 INFO ProgressMeter - chr1:178888980 7.7 7085000 918942.4
22:45:31.814 INFO ProgressMeter - chr1:182828968 7.9 7240000 919003.3
22:45:44.619 INFO ProgressMeter - chr1:183573231 8.1 7302000 902428.5
22:45:54.661 INFO ProgressMeter - chr1:186893117 8.3 7523000 910899.8
22:46:04.669 INFO ProgressMeter - chr1:198652411 8.4 7676000 911024.0
22:46:14.966 INFO ProgressMeter - chr1:198737057 8.6 7830000 910752.8
22:46:24.990 INFO ProgressMeter - chr1:203775504 8.8 8075000 921344.4
22:46:37.733 INFO ProgressMeter - chr1:206558550 9.0 8202000 913695.4
22:46:47.733 INFO ProgressMeter - chr1:207768332 9.1 8361000 914428.4
22:46:57.734 INFO ProgressMeter - chr1:219988629 9.3 8544000 917713.0
22:47:07.755 INFO ProgressMeter - chr1:225854528 9.5 8688000 916734.5
22:47:17.823 INFO ProgressMeter - chr1:228147634 9.6 8835000 916026.6
22:47:27.836 INFO ProgressMeter - chr1:231813675 9.8 8944000 911555.5
22:47:37.850 INFO ProgressMeter - chr1:235804815 10.0 9102000 912144.4
22:47:47.951 INFO ProgressMeter - chr1:236542145 10.1 9148000 901542.8
22:47:57.961 INFO ProgressMeter - chr1:246507087 10.3 9333000 904896.8
22:48:14.455 INFO ProgressMeter - chr2:218802 10.6 9429000 890470.6
22:48:24.472 INFO ProgressMeter - chr2:23747590 10.8 9783000 909562.8
22:48:34.476 INFO ProgressMeter - chr2:27384891 10.9 9980000 913714.4
22:48:44.503 INFO ProgressMeter - chr2:32470276 11.1 10156000 915815.8
22:48:54.535 INFO ProgressMeter - chr2:39084057 11.3 10307000 915627.0
22:49:04.604 INFO ProgressMeter - chr2:44209284 11.4 10514000 920294.8
22:49:14.655 INFO ProgressMeter - chr2:53706789 11.6 10688000 922005.9
22:49:24.832 INFO ProgressMeter - chr2:61109295 11.8 10832000 920952.7
22:49:34.867 INFO ProgressMeter - chr2:64134995 11.9 10955000 918351.5
22:49:44.941 INFO ProgressMeter - chr2:69479381 12.1 11196000 925527.6
22:49:56.744 INFO ProgressMeter - chr2:70152757 12.3 11306000 919665.5
22:50:06.774 INFO ProgressMeter - chr2:74102370 12.5 11465000 920089.1
22:50:16.797 INFO ProgressMeter - chr2:85578166 12.6 11640000 921774.5
22:50:26.875 INFO ProgressMeter - chr2:88736569 12.8 11805000 922570.7
22:50:36.904 INFO ProgressMeter - chr2:97142308 13.0 11915000 919159.2
22:50:46.923 INFO ProgressMeter - chr2:98601595 13.1 12049000 917675.3
22:51:01.279 INFO ProgressMeter - chr2:101305523 13.4 12229000 914716.7
22:51:11.307 INFO ProgressMeter - chr2:106867828 13.5 12400000 916054.2
22:51:21.350 INFO ProgressMeter - chr2:113174894 13.7 12560000 916540.8
22:51:31.491 INFO ProgressMeter - chr2:121757235 13.9 12749000 918998.1
22:51:41.500 INFO ProgressMeter - chr2:128266279 14.0 12891000 918194.0
22:51:51.517 INFO ProgressMeter - chr2:136115139 14.2 13022000 916624.8
22:52:04.149 INFO ProgressMeter - chr2:143289728 14.4 13167000 913295.7
22:52:14.150 INFO ProgressMeter - chr2:148275640 14.6 13509000 926308.1
22:52:24.184 INFO ProgressMeter - chr2:159773892 14.8 13736000 931195.3
22:52:34.193 INFO ProgressMeter - chr2:167968915 14.9 13900000 931775.9
22:52:44.235 INFO ProgressMeter - chr2:173948120 15.1 14039000 930652.4
22:52:54.239 INFO ProgressMeter - chr2:174967245 15.3 14171000 929134.2
22:53:04.238 INFO ProgressMeter - chr2:181367796 15.4 14304000 927716.7
22:53:14.268 INFO ProgressMeter - chr2:190901914 15.6 14475000 928737.9
22:53:24.269 INFO ProgressMeter - chr2:197059920 15.8 14678000 931797.5
22:53:34.339 INFO ProgressMeter - chr2:197496699 15.9 14851000 932841.0
22:53:44.403 INFO ProgressMeter - chr2:201278237 16.1 15014000 933247.0
22:53:55.276 INFO ProgressMeter - chr2:201478191 16.3 15056000 925434.4
22:54:05.287 INFO ProgressMeter - chr2:207926645 16.4 15200000 924801.1
22:54:15.376 INFO ProgressMeter - chr2:218126105 16.6 15340000 923866.3
22:54:25.471 INFO ProgressMeter - chr2:219240994 16.8 15490000 923542.0
22:54:35.476 INFO ProgressMeter - chr2:227351286 16.9 15635000 923010.6
22:54:45.509 INFO ProgressMeter - chr2:230534629 17.1 15796000 923399.8
22:54:55.515 INFO ProgressMeter - chr2:233191153 17.3 15921000 921721.3
22:55:06.628 INFO ProgressMeter - chr2:234493821 17.5 15958000 914062.1
22:55:16.687 INFO ProgressMeter - chr2:241081356 17.6 16110000 913992.4
22:55:29.258 INFO ProgressMeter - chr3:181037 17.8 16168000 906506.7
22:55:39.290 INFO ProgressMeter - chr3:14142777 18.0 16541000 918806.6
22:55:49.314 INFO ProgressMeter - chr3:15738525 18.2 16764000 922631.6
22:55:59.321 INFO ProgressMeter - chr3:15738553 18.3 17111000 933164.4
22:56:09.321 INFO ProgressMeter - chr3:15738576 18.5 17461000 943674.6
22:56:19.320 INFO ProgressMeter - chr3:15738607 18.7 17812000 954050.7
22:56:33.684 INFO ProgressMeter - chr3:15738617 18.9 18128000 958684.2
22:56:43.710 INFO ProgressMeter - chr3:15738619 19.1 18474000 968423.4
22:56:53.726 INFO ProgressMeter - chr3:15738621 19.2 18816000 977794.9
22:57:03.758 INFO ProgressMeter - chr3:17543530 19.4 19082000 983077.0
22:57:13.829 INFO ProgressMeter - chr3:20072303 19.6 19153000 978274.5
22:57:23.839 INFO ProgressMeter - chr3:30690476 19.7 19332000 979074.2
22:57:33.890 INFO ProgressMeter - chr3:36989075 19.9 19498000 979174.1
22:57:43.907 INFO ProgressMeter - chr3:41236610 20.1 19624000 977308.7
22:57:53.906 INFO ProgressMeter - chr3:45835704 20.2 19777000 976820.5
22:58:03.930 INFO ProgressMeter - chr3:48440284 20.4 19887000 974215.4
22:58:13.936 INFO ProgressMeter - chr3:49721174 20.6 19999000 971763.2
22:58:24.131 INFO ProgressMeter - chr3:50413439 20.8 20072000 967323.0
22:58:34.214 INFO ProgressMeter - chr3:52837023 20.9 20173000 964380.9
22:58:44.224 INFO ProgressMeter - chr3:58403904 21.1 20311000 963294.5
22:58:54.318 INFO ProgressMeter - chr3:70951616 21.3 20492000 964185.7
22:59:04.343 INFO ProgressMeter - chr3:71773329 21.4 20650000 964041.0
22:59:14.389 INFO ProgressMeter - chr3:101445795 21.6 20805000 963744.0
22:59:24.409 INFO ProgressMeter - chr3:111545226 21.8 20967000 963793.2
22:59:34.521 INFO ProgressMeter - chr3:113382190 21.9 21036000 959530.7
22:59:44.556 INFO ProgressMeter - chr3:119675162 22.1 21211000 960188.0
22:59:54.573 INFO ProgressMeter - chr3:122715636 22.3 21373000 960264.2
23:00:04.638 INFO ProgressMeter - chr3:128156742 22.4 21496000 958566.6
23:00:14.704 INFO ProgressMeter - chr3:131016806 22.6 21624000 957113.4
23:00:24.748 INFO ProgressMeter - chr3:134640920 22.8 21727000 954599.4
23:00:34.822 INFO ProgressMeter - chr3:139348476 22.9 21903000 955285.1
23:00:44.844 INFO ProgressMeter - chr3:141436914 23.1 21925000 949329.4
23:00:54.904 INFO ProgressMeter - chr3:149701906 23.3 22074000 948891.5
23:01:04.945 INFO ProgressMeter - chr3:152307616 23.4 22239000 949156.3
23:01:14.956 INFO ProgressMeter - chr3:154255057 23.6 22393000 948971.2
23:01:24.969 INFO ProgressMeter - chr3:167693487 23.8 22545000 948703.3
23:01:34.988 INFO ProgressMeter - chr3:172204238 23.9 22673000 947432.2
23:01:45.180 INFO ProgressMeter - chr3:183018017 24.1 22845000 947891.2
23:01:57.164 INFO ProgressMeter - chr3:183845464 24.3 22874000 941293.6
23:02:07.223 INFO ProgressMeter - chr3:187019487 24.5 22998000 939912.6
23:02:17.288 INFO ProgressMeter - chr3:195289841 24.6 23206000 941954.9
23:02:27.347 INFO ProgressMeter - chr3:197509049 24.8 23343000 941111.5
23:02:45.601 INFO ProgressMeter - chr4:41800 25.1 23427000 933053.6
23:02:55.608 INFO ProgressMeter - chr4:10450393 25.3 23750000 939676.1
23:03:05.673 INFO ProgressMeter - chr4:25818220 25.4 23963000 941852.4
23:03:15.685 INFO ProgressMeter - chr4:39556441 25.6 24194000 944735.5
23:03:25.697 INFO ProgressMeter - chr4:49112687 25.8 24389000 946184.7
23:03:35.698 INFO ProgressMeter - chr4:70709942 25.9 24558000 946619.8
23:03:45.726 INFO ProgressMeter - chr4:78840466 26.1 24740000 947530.9
23:03:55.741 INFO ProgressMeter - chr4:84903590 26.3 24897000 947486.8
23:04:05.754 INFO ProgressMeter - chr4:89726325 26.4 25079000 948389.9
23:04:20.758 INFO ProgressMeter - chr4:101300878 26.7 25277000 946922.8
23:04:30.762 INFO ProgressMeter - chr4:112345272 26.9 25617000 953703.5
23:04:40.768 INFO ProgressMeter - chr4:122347615 27.0 25787000 954108.2
23:04:50.811 INFO ProgressMeter - chr4:141301710 27.2 25969000 954928.1
23:05:00.825 INFO ProgressMeter - chr4:148151636 27.4 26118000 954550.0
23:05:10.844 INFO ProgressMeter - chr4:152648160 27.5 26246000 953409.0
23:05:20.903 INFO ProgressMeter - chr4:163545378 27.7 26414000 953703.1
23:05:31.073 INFO ProgressMeter - chr4:177440311 27.9 26573000 953607.9
23:05:41.113 INFO ProgressMeter - chr4:185152116 28.0 26720000 953159.5
23:05:51.864 INFO ProgressMeter - chr5:201335 28.2 26739000 947779.8
23:06:01.880 INFO ProgressMeter - chr5:35863542 28.4 27076000 954079.0
23:06:11.889 INFO ProgressMeter - chr5:39134114 28.5 27267000 955195.1
23:06:21.890 INFO ProgressMeter - chr5:50418852 28.7 27452000 956092.6
23:06:31.914 INFO ProgressMeter - chr5:55014794 28.9 27633000 956829.6
23:06:41.969 INFO ProgressMeter - chr5:62381216 29.0 27810000 957402.3
23:06:51.985 INFO ProgressMeter - chr5:69786348 29.2 27984000 957887.6
23:07:02.045 INFO ProgressMeter - chr5:70477293 29.4 28159000 958378.1
23:07:12.103 INFO ProgressMeter - chr5:71020667 29.5 28309000 958016.9
23:07:22.104 INFO ProgressMeter - chr5:75585375 29.7 28488000 958667.4
23:07:32.113 INFO ProgressMeter - chr5:80142475 29.9 28639000 958368.3
23:07:42.115 INFO ProgressMeter - chr5:82276111 30.0 28724000 955880.4
23:07:52.165 INFO ProgressMeter - chr5:88880504 30.2 28870000 955414.0
23:08:02.217 INFO ProgressMeter - chr5:96742717 30.4 29068000 956662.0
23:08:12.282 INFO ProgressMeter - chr5:100852314 30.6 29195000 955566.2
23:08:22.308 INFO ProgressMeter - chr5:111414442 30.7 29381000 956423.1
23:08:32.332 INFO ProgressMeter - chr5:119129219 30.9 29500000 955102.6
23:08:42.458 INFO ProgressMeter - chr5:126466891 31.1 29602000 953196.7
23:08:52.516 INFO ProgressMeter - chr5:132428179 31.2 29749000 952787.1
23:09:02.523 INFO ProgressMeter - chr5:134927135 31.4 29902000 952599.4
23:09:12.583 INFO ProgressMeter - chr5:140441041 31.6 30053000 952322.6
23:09:22.595 INFO ProgressMeter - chr5:142939724 31.7 30221000 952609.1
23:09:32.621 INFO ProgressMeter - chr5:148882996 31.9 30450000 954798.4
23:09:44.612 INFO ProgressMeter - chr5:150405165 32.1 30525000 951189.4
23:09:54.864 INFO ProgressMeter - chr5:154945350 32.3 30702000 951638.0
23:10:04.969 INFO ProgressMeter - chr5:169654486 32.4 30893000 952585.5
23:10:14.987 INFO ProgressMeter - chr5:170262397 32.6 31064000 952952.1
23:10:25.066 INFO ProgressMeter - chr5:177003095 32.8 31317000 955788.0
23:10:38.549 INFO ProgressMeter - chr5:179579024 33.0 31426000 952582.1
23:10:55.567 INFO ProgressMeter - chr6:81788 33.3 31588000 949330.3
23:11:05.591 INFO ProgressMeter - chr6:16695580 33.4 32095000 959749.1
23:11:15.598 INFO ProgressMeter - chr6:24838396 33.6 32301000 961115.2
23:11:25.673 INFO ProgressMeter - chr6:26411117 33.8 32612000 965545.3
23:11:35.684 INFO ProgressMeter - chr6:29945281 33.9 32774000 965571.3
23:11:45.923 INFO ProgressMeter - chr6:31163221 34.1 32974000 966603.9
23:11:55.994 INFO ProgressMeter - chr6:31354238 34.3 33117000 966042.5
23:12:06.048 INFO ProgressMeter - chr6:31649387 34.4 33249000 965175.7
23:12:16.056 INFO ProgressMeter - chr6:32833435 34.6 33370000 964019.9
23:12:26.077 INFO ProgressMeter - chr6:33276222 34.8 33457000 961892.7
23:12:36.120 INFO ProgressMeter - chr6:36052803 34.9 33614000 961777.6
23:12:46.123 INFO ProgressMeter - chr6:37822079 35.1 33767000 961568.5
23:12:56.125 INFO ProgressMeter - chr6:42209612 35.3 33968000 962722.2
23:13:06.286 INFO ProgressMeter - chr6:43451190 35.5 34069000 960972.8
23:13:16.305 INFO ProgressMeter - chr6:52995630 35.6 34227000 960903.5
23:13:26.321 INFO ProgressMeter - chr6:52995664 35.8 34394000 961087.3
23:13:36.339 INFO ProgressMeter - chr6:52995777 36.0 34762000 966859.5
23:13:46.359 INFO ProgressMeter - chr6:52995852 36.1 35129000 972550.2
23:13:56.409 INFO ProgressMeter - chr6:69737140 36.3 35280000 972221.8
23:14:06.416 INFO ProgressMeter - chr6:72674273 36.5 35341000 969447.1
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23:14:36.632 INFO ProgressMeter - chr6:107906095 37.0 35983000 973608.2
23:14:46.665 INFO ProgressMeter - chr6:111663577 37.1 36143000 973532.7
23:14:56.674 INFO ProgressMeter - chr6:116130460 37.3 36223000 971323.0
23:15:06.674 INFO ProgressMeter - chr6:127282468 37.5 36375000 971059.1
23:15:16.719 INFO ProgressMeter - chr6:132755780 37.6 36545000 971257.0
23:15:26.759 INFO ProgressMeter - chr6:141848882 37.8 36707000 971242.7
23:15:36.802 INFO ProgressMeter - chr6:144488784 38.0 36866000 971148.6
23:15:46.828 INFO ProgressMeter - chr6:149398171 38.1 37024000 971036.4
23:15:56.864 INFO ProgressMeter - chr6:153027775 38.3 37121000 969328.1
23:16:06.891 INFO ProgressMeter - chr6:156111016 38.5 37186000 966806.4
23:16:16.955 INFO ProgressMeter - chr6:159036868 38.6 37329000 966310.3
23:16:27.032 INFO ProgressMeter - chr6:160091408 38.8 37497000 966457.4
23:16:37.141 INFO ProgressMeter - chr6:169654972 39.0 37665000 966590.0
23:16:52.672 INFO ProgressMeter - chr7:10523 39.2 37711000 961384.2
23:17:02.693 INFO ProgressMeter - chr7:7256200 39.4 38088000 966878.4
23:17:12.693 INFO ProgressMeter - chr7:23530799 39.6 38297000 968088.1
23:17:22.715 INFO ProgressMeter - chr7:28164027 39.7 38454000 967969.7
23:17:32.719 INFO ProgressMeter - chr7:30633741 39.9 38626000 968235.6
23:17:42.728 INFO ProgressMeter - chr7:36604825 40.1 38783000 968122.8
23:17:52.762 INFO ProgressMeter - chr7:37694564 40.2 38925000 967628.5
23:18:02.793 INFO ProgressMeter - chr7:44058471 40.4 39098000 967906.0
23:18:12.819 INFO ProgressMeter - chr7:50330351 40.6 39239000 967394.8
23:18:22.824 INFO ProgressMeter - chr7:65978476 40.7 39410000 967632.6
23:18:33.073 INFO ProgressMeter - chr7:74097135 40.9 39546000 966916.9
23:18:43.102 INFO ProgressMeter - chr7:75160729 41.1 39623000 964856.4
23:18:53.119 INFO ProgressMeter - chr7:77393557 41.2 39764000 964368.9
23:19:03.132 INFO ProgressMeter - chr7:91992986 41.4 39912000 964056.8
23:19:13.193 INFO ProgressMeter - chr7:98976502 41.6 40052000 963535.4
23:19:23.248 INFO ProgressMeter - chr7:100580845 41.7 40164000 962350.4
23:19:33.393 INFO ProgressMeter - chr7:103094777 41.9 40285000 961354.5
23:19:48.629 INFO ProgressMeter - chr7:106272578 42.2 40506000 960806.1
23:19:58.661 INFO ProgressMeter - chr7:111976608 42.3 40705000 961712.6
23:20:08.691 INFO ProgressMeter - chr7:127767638 42.5 40873000 961882.9
23:20:18.732 INFO ProgressMeter - chr7:130912738 42.7 41017000 961484.7
23:20:28.746 INFO ProgressMeter - chr7:139084013 42.8 41326000 964952.8
23:20:38.761 INFO ProgressMeter - chr7:140454717 43.0 41493000 965090.8
23:20:49.008 INFO ProgressMeter - chr7:142932595 43.2 41661000 965164.4
23:20:59.087 INFO ProgressMeter - chr7:149847894 43.3 41819000 965069.1
23:21:09.097 INFO ProgressMeter - chr7:152031446 43.5 41954000 964471.2
23:21:19.097 INFO ProgressMeter - chr7:157374538 43.7 42090000 963904.5
23:21:31.687 INFO ProgressMeter - chr8:65600 43.9 42121000 960001.3
23:21:41.692 INFO ProgressMeter - chr8:22618422 44.0 42529000 965630.3
23:21:51.719 INFO ProgressMeter - chr8:23567974 44.2 42736000 966662.4
23:22:01.749 INFO ProgressMeter - chr8:27343252 44.4 42961000 968091.2
23:22:11.777 INFO ProgressMeter - chr8:37862597 44.5 43114000 967893.7
23:22:21.841 INFO ProgressMeter - chr8:42416996 44.7 43267000 967684.9
23:22:31.865 INFO ProgressMeter - chr8:55888563 44.9 43421000 967514.1
23:22:41.910 INFO ProgressMeter - chr8:61015704 45.0 43625000 968446.9
23:22:51.935 INFO ProgressMeter - chr8:67338957 45.2 43750000 967632.4
23:23:01.966 INFO ProgressMeter - chr8:80993298 45.4 43924000 967901.9
23:23:12.008 INFO ProgressMeter - chr8:86472394 45.5 43985000 965684.6
23:23:22.016 INFO ProgressMeter - chr8:96899972 45.7 44144000 965639.1
23:23:32.022 INFO ProgressMeter - chr8:100703242 45.9 44319000 965943.5
23:23:42.053 INFO ProgressMeter - chr8:106749581 46.0 44481000 965954.6
23:23:52.098 INFO ProgressMeter - chr8:123080604 46.2 44672000 966588.2
23:24:02.112 INFO ProgressMeter - chr8:127086376 46.4 44791000 965675.7
23:24:12.696 INFO ProgressMeter - chr8:130124100 46.6 44895000 964250.7
23:24:22.720 INFO ProgressMeter - chr8:133534028 46.7 45107000 965340.2
23:24:32.731 INFO ProgressMeter - chr8:142853966 46.9 45264000 965253.4
23:24:42.838 INFO ProgressMeter - chr8:144424072 47.1 45348000 963583.4
23:24:55.179 INFO ProgressMeter - chr9:14084 47.3 45376000 959982.7
23:25:05.199 INFO ProgressMeter - chr9:9442104 47.4 46017000 970116.3
23:25:15.206 INFO ProgressMeter - chr9:9442133 47.6 46621000 979406.0
23:25:26.942 INFO ProgressMeter - chr9:9442163 47.8 47346000 990566.7
23:25:37.104 INFO ProgressMeter - chr9:15856963 48.0 48258000 1006082.1
23:25:48.155 INFO ProgressMeter - chr9:21814893 48.2 48335000 1003832.8
23:25:58.163 INFO ProgressMeter - chr9:34125095 48.3 48574000 1005313.8
23:26:08.219 INFO ProgressMeter - chr9:36136791 48.5 48712000 1004685.0
23:26:18.250 INFO ProgressMeter - chr9:41037315 48.7 48869000 1004459.6
23:26:28.312 INFO ProgressMeter - chr9:68912657 48.8 49056000 1004839.6
23:26:38.363 INFO ProgressMeter - chr9:76493830 49.0 49179000 1003914.6
23:26:49.521 INFO ProgressMeter - chr9:78024591 49.2 49261000 1001785.5
23:26:59.542 INFO ProgressMeter - chr9:86324743 49.3 49439000 1002001.7
23:27:09.563 INFO ProgressMeter - chr9:92964719 49.5 49641000 1002701.6
23:27:19.564 INFO ProgressMeter - chr9:96747998 49.7 49767000 1001873.6
23:27:29.730 INFO ProgressMeter - chr9:104098499 49.8 49894000 1001015.8
23:27:39.740 INFO ProgressMeter - chr9:111897999 50.0 50036000 1000515.9
23:27:49.770 INFO ProgressMeter - chr9:114383713 50.2 50176000 999973.1
23:27:59.772 INFO ProgressMeter - chr9:120456495 50.3 50237000 997873.3
23:28:09.790 INFO ProgressMeter - chr9:123160367 50.5 50384000 997485.0
23:28:19.804 INFO ProgressMeter - chr9:127445155 50.7 50550000 997475.6
23:28:29.836 INFO ProgressMeter - chr9:128751493 50.8 50644000 996044.5
23:28:39.899 INFO ProgressMeter - chr9:131487173 51.0 50757000 994984.6
23:28:49.995 INFO ProgressMeter - chr9:133762979 51.2 50934000 995172.0
23:29:00.040 INFO ProgressMeter - chr9:136823590 51.3 51042000 994030.3
23:29:14.510 INFO ProgressMeter - chr9:137719996 51.6 51082000 990158.9
23:29:24.514 INFO ProgressMeter - chr10:5699964 51.8 51234000 989905.9
23:29:34.518 INFO ProgressMeter - chr10:12749841 51.9 51662000 994970.1
23:29:44.551 INFO ProgressMeter - chr10:21701781 52.1 51888000 996114.8
23:29:54.574 INFO ProgressMeter - chr10:26777168 52.3 52078000 996566.7
23:30:04.602 INFO ProgressMeter - chr10:35547095 52.4 52369000 998940.1
23:30:14.630 INFO ProgressMeter - chr10:45857337 52.6 52575000 999682.5
23:30:24.677 INFO ProgressMeter - chr10:49924674 52.8 52745000 999731.8
23:30:34.713 INFO ProgressMeter - chr10:62027873 52.9 52905000 999595.4
23:30:47.041 INFO ProgressMeter - chr10:68969033 53.1 53024000 997969.5
23:30:57.051 INFO ProgressMeter - chr10:71817361 53.3 53185000 997866.4
23:31:07.090 INFO ProgressMeter - chr10:74205089 53.5 53357000 997960.7
23:31:17.106 INFO ProgressMeter - chr10:84380342 53.6 53566000 998751.4
23:31:27.108 INFO ProgressMeter - chr10:88099743 53.8 53713000 998389.1
23:31:37.164 INFO ProgressMeter - chr10:93675611 54.0 53847000 997771.5
23:31:49.941 INFO ProgressMeter - chr10:96616641 54.2 53941000 995585.1
23:31:59.987 INFO ProgressMeter - chr10:100962780 54.3 54088000 995222.4
23:32:10.053 INFO ProgressMeter - chr10:103438301 54.5 54231000 994782.8
23:32:20.064 INFO ProgressMeter - chr10:112443028 54.7 54377000 994417.4
23:32:30.114 INFO ProgressMeter - chr10:119838683 54.8 54555000 994625.9
23:32:40.137 INFO ProgressMeter - chr10:124990395 55.0 54755000 995241.5
23:32:56.918 INFO ProgressMeter - chr10:132754216 55.3 54875000 992377.5
23:33:06.924 INFO ProgressMeter - chr11:1853083 55.5 55067000 992855.3
23:33:16.929 INFO ProgressMeter - chr11:5225468 55.6 55291000 993905.9
23:33:26.980 INFO ProgressMeter - chr11:5225472 55.8 55485000 994398.8
23:33:37.007 INFO ProgressMeter - chr11:5225492 56.0 55678000 994878.0
23:33:47.037 INFO ProgressMeter - chr11:5225493 56.1 55871000 995353.5
23:33:57.058 INFO ProgressMeter - chr11:5225499 56.3 56064000 995828.8
23:34:07.088 INFO ProgressMeter - chr11:5225528 56.5 56257000 996298.7
23:34:17.110 INFO ProgressMeter - chr11:5225536 56.6 56439000 996573.8
23:34:27.118 INFO ProgressMeter - chr11:5225540 56.8 56610000 996657.9
23:34:40.501 INFO ProgressMeter - chr11:5225545 57.0 56763000 995442.8
23:34:50.526 INFO ProgressMeter - chr11:5225554 57.2 56947000 995751.6
23:35:00.530 INFO ProgressMeter - chr11:5225566 57.4 57132000 996082.4
23:35:10.549 INFO ProgressMeter - chr11:5225579 57.5 57314000 996354.8
23:35:20.552 INFO ProgressMeter - chr11:5225580 57.7 57708000 1000305.1
23:35:30.561 INFO ProgressMeter - chr11:5225582 57.9 58086000 1003954.3
23:35:48.833 INFO ProgressMeter - chr11:5225600 58.2 58688000 1009048.0
23:35:58.833 INFO ProgressMeter - chr11:5225626 58.3 59303000 1016708.6
23:36:15.138 INFO ProgressMeter - chr11:5225645 58.6 59687000 1018546.6
23:36:25.139 INFO ProgressMeter - chr11:5225657 58.8 60150000 1023536.2
23:36:38.248 INFO ProgressMeter - chr11:5225659 59.0 60360000 1023305.5
23:36:48.257 INFO ProgressMeter - chr11:5225665 59.2 60750000 1027012.5
23:37:00.841 INFO ProgressMeter - chr11:5225668 59.4 60957000 1026871.1
23:37:10.855 INFO ProgressMeter - chr11:5225671 59.5 61305000 1029837.9
23:37:21.865 INFO ProgressMeter - chr11:5225672 59.7 61504000 1030005.8
23:37:31.887 INFO ProgressMeter - chr11:5225690 59.9 61929000 1034230.2
23:37:42.497 INFO ProgressMeter - chr11:5225695 60.1 62145000 1034781.6
23:37:52.526 INFO ProgressMeter - chr11:5225713 60.2 62526000 1038236.0
23:38:03.298 INFO ProgressMeter - chr11:5225724 60.4 62706000 1038130.1
23:38:13.299 INFO ProgressMeter - chr11:5226590 60.6 63133000 1042323.3
23:38:26.328 INFO ProgressMeter - chr11:5226598 60.8 63516000 1044900.2
23:38:36.339 INFO ProgressMeter - chr11:5226609 61.0 64104000 1051686.7
23:38:48.596 INFO ProgressMeter - chr11:5226628 61.2 64454000 1053896.6
23:38:58.612 INFO ProgressMeter - chr11:5226648 61.3 64966000 1059376.8
23:39:13.342 INFO ProgressMeter - chr11:5226655 61.6 65255000 1059846.6
23:39:23.354 INFO ProgressMeter - chr11:5226677 61.7 65738000 1064805.4
23:39:37.456 INFO ProgressMeter - chr11:5226693 62.0 66119000 1066915.0
23:39:47.459 INFO ProgressMeter - chr11:5226721 62.1 66637000 1072388.7
23:39:57.477 INFO ProgressMeter - chr11:5226731 62.3 66942000 1074410.1
23:40:07.510 INFO ProgressMeter - chr11:5226733 62.5 67015000 1072702.8
23:40:17.543 INFO ProgressMeter - chr11:5226755 62.6 67358000 1075315.0
23:40:35.132 INFO ProgressMeter - chr11:5226770 62.9 67539000 1073182.1
23:40:45.132 INFO ProgressMeter - chr11:5226932 63.1 67844000 1075181.1
23:40:57.214 INFO ProgressMeter - chr11:5226955 63.3 68281000 1078664.4
23:41:07.216 INFO ProgressMeter - chr11:5226966 63.5 68432000 1078210.4
23:41:17.236 INFO ProgressMeter - chr11:5226981 63.6 68884000 1082483.8
23:41:27.261 INFO ProgressMeter - chr11:6604269 63.8 69248000 1085354.4
23:41:37.261 INFO ProgressMeter - chr11:8682814 64.0 69305000 1083417.7
23:41:47.303 INFO ProgressMeter - chr11:13312140 64.1 69518000 1083911.5
23:41:57.316 INFO ProgressMeter - chr11:17949095 64.3 69668000 1083430.9
23:42:07.355 INFO ProgressMeter - chr11:33350133 64.5 69791000 1082527.2
23:42:17.412 INFO ProgressMeter - chr11:44115400 64.6 69981000 1082659.2
23:42:27.472 INFO ProgressMeter - chr11:47168981 64.8 70101000 1081710.1
23:42:43.303 INFO ProgressMeter - chr11:47991348 65.1 70170000 1078384.0
23:42:53.387 INFO ProgressMeter - chr11:60380740 65.2 70348000 1078334.4
23:43:03.391 INFO ProgressMeter - chr11:62526869 65.4 70504000 1077970.8
23:43:13.480 INFO ProgressMeter - chr11:64308269 65.6 70665000 1077661.9
23:43:23.505 INFO ProgressMeter - chr11:65425368 65.7 70764000 1076428.5
23:43:33.520 INFO ProgressMeter - chr11:65502935 65.9 71017000 1077541.1
23:43:43.532 INFO ProgressMeter - chr11:65503725 66.1 71100000 1076076.3
23:43:53.557 INFO ProgressMeter - chr11:65505569 66.2 71340000 1076984.9
23:44:03.612 INFO ProgressMeter - chr11:66244048 66.4 71518000 1076947.5
23:44:13.697 INFO ProgressMeter - chr11:68006477 66.6 71631000 1075926.1
23:44:23.769 INFO ProgressMeter - chr11:72027926 66.7 71736000 1074793.0
23:44:33.784 INFO ProgressMeter - chr11:73402090 66.9 71851000 1073830.8
23:44:43.849 INFO ProgressMeter - chr11:75798515 67.1 71988000 1073187.4
23:44:53.891 INFO ProgressMeter - chr11:76531923 67.2 72027000 1071096.4
23:45:03.915 INFO ProgressMeter - chr11:85967762 67.4 72200000 1071008.2
23:45:13.936 INFO ProgressMeter - chr11:94219076 67.6 72345000 1070506.9
23:45:23.975 INFO ProgressMeter - chr11:104944823 67.7 72551000 1070903.8
23:45:33.998 INFO ProgressMeter - chr11:111352853 67.9 72693000 1070360.5
23:45:44.131 INFO ProgressMeter - chr11:117285899 68.1 72811000 1069438.6
23:46:00.117 INFO ProgressMeter - chr11:118751841 68.3 72940000 1067157.2
23:46:10.172 INFO ProgressMeter - chr11:121550631 68.5 73109000 1067013.6
23:46:20.268 INFO ProgressMeter - chr11:123738415 68.7 73293000 1067078.8
23:46:30.286 INFO ProgressMeter - chr11:128772858 68.9 73492000 1067381.1
23:46:50.467 INFO ProgressMeter - chr12:14889 69.2 73595000 1063680.9
23:47:00.473 INFO ProgressMeter - chr12:9021388 69.4 73981000 1066688.8
23:47:10.473 INFO ProgressMeter - chr12:10315620 69.5 74216000 1067511.8
23:47:20.552 INFO ProgressMeter - chr12:14795862 69.7 74482000 1068755.5
23:47:30.579 INFO ProgressMeter - chr12:26921218 69.9 74674000 1068947.2
23:47:40.645 INFO ProgressMeter - chr12:32721875 70.0 74876000 1069270.9
23:47:50.725 INFO ProgressMeter - chr12:43783713 70.2 75043000 1069090.9
23:48:00.737 INFO ProgressMeter - chr12:48153400 70.4 75249000 1069483.2
23:48:10.765 INFO ProgressMeter - chr12:50725118 70.5 75381000 1068820.7
23:48:20.926 INFO ProgressMeter - chr12:53009617 70.7 75451000 1067250.5
23:48:31.008 INFO ProgressMeter - chr12:55805371 70.9 75624000 1067160.9
23:48:41.038 INFO ProgressMeter - chr12:57190863 71.0 75751000 1066437.6
23:48:51.039 INFO ProgressMeter - chr12:62563054 71.2 75931000 1066468.8
23:49:01.095 INFO ProgressMeter - chr12:68435534 71.4 76110000 1066472.7
23:49:13.113 INFO ProgressMeter - chr12:75503102 71.6 76303000 1066184.4
23:49:23.135 INFO ProgressMeter - chr12:89695312 71.7 76505000 1066517.8
23:49:33.193 INFO ProgressMeter - chr12:95998725 71.9 76685000 1066534.9
23:49:43.409 INFO ProgressMeter - chr12:102378362 72.1 76803000 1065652.3
23:49:53.445 INFO ProgressMeter - chr12:104688816 72.2 76954000 1065275.1
23:50:03.479 INFO ProgressMeter - chr12:108801771 72.4 77120000 1065107.3
23:50:13.616 INFO ProgressMeter - chr12:111406754 72.6 77222000 1064033.2
23:50:23.677 INFO ProgressMeter - chr12:112153226 72.7 77267000 1062199.1
23:50:33.760 INFO ProgressMeter - chr12:116851282 72.9 77443000 1062164.8
23:50:43.871 INFO ProgressMeter - chr12:121229841 73.1 77604000 1061918.6
23:50:53.938 INFO ProgressMeter - chr12:123320497 73.2 77701000 1060810.4
23:51:03.962 INFO ProgressMeter - chr12:124913095 73.4 77853000 1060466.8
23:51:13.987 INFO ProgressMeter - chr12:132741496 73.6 77985000 1059852.6
23:51:28.111 INFO ProgressMeter - chr13:18299235 73.8 78011000 1056825.0
23:51:38.138 INFO ProgressMeter - chr13:34981885 74.0 78395000 1059628.2
23:51:48.188 INFO ProgressMeter - chr13:45340036 74.2 78639000 1060525.1
23:51:58.215 INFO ProgressMeter - chr13:48256451 74.3 78832000 1060737.3
23:52:08.246 INFO ProgressMeter - chr13:51594115 74.5 79017000 1060840.2
23:52:18.284 INFO ProgressMeter - chr13:75648283 74.7 79220000 1061182.1
23:52:28.305 INFO ProgressMeter - chr13:98548312 74.8 79373000 1060858.1
23:52:38.324 INFO ProgressMeter - chr13:109511479 75.0 79529000 1060576.2
23:52:48.392 INFO ProgressMeter - chr13:113974334 75.2 79665000 1060017.8
23:52:59.892 INFO ProgressMeter - chr14:18461140 75.3 79702000 1057812.4
23:53:09.926 INFO ProgressMeter - chr14:30712189 75.5 80152000 1061428.9
23:53:19.965 INFO ProgressMeter - chr14:49538789 75.7 80355000 1061764.6
23:53:30.012 INFO ProgressMeter - chr14:49543275 75.8 80563000 1062162.9
23:53:40.032 INFO ProgressMeter - chr14:49572997 76.0 80769000 1062539.4
23:53:50.044 INFO ProgressMeter - chr14:49581951 76.2 80924000 1062246.6
23:54:00.084 INFO ProgressMeter - chr14:49586588 76.3 81104000 1062276.1
23:54:14.607 INFO ProgressMeter - chr14:49586599 76.6 81479000 1063815.1
23:54:24.608 INFO ProgressMeter - chr14:49586637 76.8 82131000 1069999.5
23:54:35.164 INFO ProgressMeter - chr14:49586651 76.9 82455000 1071763.7
23:54:45.174 INFO ProgressMeter - chr14:49586680 77.1 83136000 1078277.2
23:54:57.112 INFO ProgressMeter - chr14:49586682 77.3 83442000 1079460.4
23:55:07.112 INFO ProgressMeter - chr14:49586684 77.5 84123000 1085928.9
23:55:21.209 INFO ProgressMeter - chr14:49586685 77.7 84442000 1086750.7
23:55:31.222 INFO ProgressMeter - chr14:49586710 77.9 85119000 1093115.8
23:55:46.368 INFO ProgressMeter - chr14:49586715 78.1 85442000 1093718.3
23:55:56.381 INFO ProgressMeter - chr14:49586774 78.3 86095000 1099727.9
23:56:11.978 INFO ProgressMeter - chr14:49853688 78.5 86377000 1099678.8
23:56:25.172 INFO ProgressMeter - chr14:49862569 78.8 87200000 1107057.0
23:56:35.700 INFO ProgressMeter - chr14:49862575 78.9 87279000 1105597.0
23:56:45.702 INFO ProgressMeter - chr14:49862644 79.1 88248000 1115516.4
23:56:55.707 INFO ProgressMeter - chr14:49862648 79.3 88367000 1114670.9
23:57:15.170 INFO ProgressMeter - chr14:49862671 79.6 89258000 1121321.8
23:57:25.171 INFO ProgressMeter - chr14:49862684 79.8 90222000 1131063.8
23:57:36.330 INFO ProgressMeter - chr14:49862687 80.0 90258000 1128883.0
23:57:46.336 INFO ProgressMeter - chr14:49862721 80.1 91248000 1138889.8
23:57:57.594 INFO ProgressMeter - chr14:49862721 80.3 91253000 1136291.1
23:58:08.818 INFO ProgressMeter - chr14:49862763 80.5 91995000 1142868.4
23:58:21.421 INFO ProgressMeter - chr14:49862768 80.7 92253000 1143090.7
23:58:31.454 INFO ProgressMeter - chr14:55055287 80.9 92494000 1143707.2
23:58:41.460 INFO ProgressMeter - chr14:60109152 81.0 92644000 1143204.5
23:58:51.496 INFO ProgressMeter - chr14:64220448 81.2 92832000 1143164.9
23:59:01.546 INFO ProgressMeter - chr14:67648627 81.4 92941000 1142151.5
23:59:11.569 INFO ProgressMeter - chr14:70973326 81.5 93134000 1142178.3
23:59:24.475 INFO ProgressMeter - chr14:71361437 81.8 93186000 1139809.3
23:59:34.513 INFO ProgressMeter - chr14:74673792 81.9 93340000 1139361.4
23:59:44.546 INFO ProgressMeter - chr14:81494935 82.1 93466000 1138575.4
23:59:54.555 INFO ProgressMeter - chr14:90971436 82.3 93619000 1138126.4
00:00:04.600 INFO ProgressMeter - chr14:92980158 82.4 93784000 1137816.6
00:00:14.612 INFO ProgressMeter - chr14:96554695 82.6 93925000 1137225.2
00:00:24.648 INFO ProgressMeter - chr14:101829946 82.8 94094000 1136968.8
00:00:34.780 INFO ProgressMeter - chr14:101991602 82.9 94127000 1135051.2
00:00:44.937 INFO ProgressMeter - chr14:105155748 83.1 94267000 1134423.7
00:00:58.717 INFO ProgressMeter - chr15:20118463 83.3 94330000 1132053.1
00:01:08.756 INFO ProgressMeter - chr15:38508472 83.5 94636000 1133449.4
00:01:18.821 INFO ProgressMeter - chr15:43396097 83.7 94812000 1133280.5
00:01:28.854 INFO ProgressMeter - chr15:44717658 83.8 94977000 1132988.2
00:01:38.940 INFO ProgressMeter - chr15:51494282 84.0 95152000 1132804.2
00:01:48.958 INFO ProgressMeter - chr15:58150338 84.2 95352000 1132933.2
00:01:59.064 INFO ProgressMeter - chr15:61954338 84.3 95540000 1132899.7
00:02:09.083 INFO ProgressMeter - chr15:64327953 84.5 95686000 1132388.7
00:02:19.115 INFO ProgressMeter - chr15:67738659 84.7 95847000 1132054.1
00:02:29.228 INFO ProgressMeter - chr15:73219232 84.8 96018000 1131820.8
00:02:39.232 INFO ProgressMeter - chr15:76765352 85.0 96143000 1131071.1
00:02:49.271 INFO ProgressMeter - chr15:78934624 85.2 96214000 1129682.7
00:02:59.290 INFO ProgressMeter - chr15:85671103 85.3 96416000 1129839.3
00:03:09.297 INFO ProgressMeter - chr15:90501158 85.5 96596000 1129740.8
00:03:19.319 INFO ProgressMeter - chr15:93014789 85.7 96756000 1129405.5
00:03:29.335 INFO ProgressMeter - chr15:101646822 85.8 96979000 1129807.0
00:03:41.691 INFO ProgressMeter - chr16:11885 86.0 96998000 1127323.8
00:03:54.690 INFO ProgressMeter - chr16:172892 86.3 98977000 1147434.8
00:04:06.134 INFO ProgressMeter - chr16:172915 86.5 99950000 1156158.3
00:04:19.431 INFO ProgressMeter - chr16:172951 86.7 100743000 1162351.5
00:04:34.201 INFO ProgressMeter - chr16:172972 86.9 101431000 1166975.0
00:04:46.875 INFO ProgressMeter - chr16:172975 87.1 101969000 1170320.6
00:04:59.438 INFO ProgressMeter - chr16:173007 87.3 102728000 1176205.2
00:05:12.647 INFO ProgressMeter - chr16:173167 87.6 103686000 1184189.1
00:05:27.032 INFO ProgressMeter - chr16:173193 87.8 104624000 1191639.0
00:05:43.909 INFO ProgressMeter - chr16:173226 88.1 105456000 1197279.5
00:05:59.067 INFO ProgressMeter - chr16:173250 88.3 106453000 1205142.2
00:06:09.557 INFO ProgressMeter - chr16:173261 88.5 107207000 1211280.7
00:06:19.559 INFO ProgressMeter - chr16:173263 88.7 107262000 1209623.8
00:06:36.738 INFO ProgressMeter - chr16:173278 89.0 107866000 1212520.2
00:06:53.612 INFO ProgressMeter - chr16:173290 89.2 108531000 1216150.8
00:07:04.275 INFO ProgressMeter - chr16:173299 89.4 108999000 1218967.5
00:07:14.275 INFO ProgressMeter - chr16:173300 89.6 109185000 1218776.0
00:07:26.789 INFO ProgressMeter - chr16:173313 89.8 109625000 1220845.2
00:07:41.758 INFO ProgressMeter - chr16:173327 90.0 110262000 1224536.9
00:07:51.764 INFO ProgressMeter - chr16:173474 90.2 110916000 1229522.9
00:08:01.769 INFO ProgressMeter - chr16:173488 90.4 111335000 1231890.7
00:08:18.681 INFO ProgressMeter - chr16:173505 90.7 111902000 1234314.7
00:08:36.214 INFO ProgressMeter - chr16:173516 91.0 112792000 1240134.4
00:08:46.223 INFO ProgressMeter - chr16:173530 91.1 113565000 1246347.5
00:08:57.272 INFO ProgressMeter - chr16:173534 91.3 113731000 1245652.0
00:09:07.274 INFO ProgressMeter - chr16:173546 91.5 114331000 1249941.2
00:09:19.333 INFO ProgressMeter - chr16:173552 91.7 114631000 1250473.4
00:09:29.510 INFO ProgressMeter - chr16:173583 91.8 115175000 1254087.3
00:09:42.138 INFO ProgressMeter - chr16:173585 92.1 115431000 1254001.0
00:09:54.569 INFO ProgressMeter - chr16:173588 92.3 116140000 1258869.9
00:10:04.570 INFO ProgressMeter - chr16:173589 92.4 116221000 1257476.0
00:10:17.116 INFO ProgressMeter - chr16:173625 92.6 116774000 1260607.3
00:10:28.537 INFO ProgressMeter - chr16:176694 92.8 117060000 1261103.5
00:10:42.830 INFO ProgressMeter - chr16:176729 93.1 118045000 1268459.5
00:10:58.441 INFO ProgressMeter - chr16:176770 93.3 118957000 1274695.7
00:11:16.004 INFO ProgressMeter - chr16:176778 93.6 119893000 1280708.4
00:11:34.001 INFO ProgressMeter - chr16:176793 93.9 120775000 1286009.5
00:11:44.013 INFO ProgressMeter - chr16:176811 94.1 121091000 1287087.6
00:11:56.627 INFO ProgressMeter - chr16:176958 94.3 121569000 1289287.0
00:12:12.376 INFO ProgressMeter - chr16:176992 94.6 122565000 1296241.6
00:12:30.594 INFO ProgressMeter - chr16:177013 94.9 123565000 1302634.5
00:12:44.578 INFO ProgressMeter - chr16:177061 95.1 124564000 1309947.5
00:12:57.838 INFO ProgressMeter - chr16:177091 95.3 125541000 1317160.7
00:13:11.388 INFO ProgressMeter - chr16:177103 95.5 126526000 1324357.2
00:13:26.965 INFO ProgressMeter - chr16:177121 95.8 127487000 1330799.7
00:13:45.062 INFO ProgressMeter - chr16:177285 96.1 128340000 1335499.2
00:13:59.909 INFO ProgressMeter - chr16:177322 96.3 129308000 1342116.2
00:14:14.557 INFO ProgressMeter - chr16:177342 96.6 130308000 1349077.0
00:14:30.715 INFO ProgressMeter - chr16:177395 96.9 131308000 1355650.4
00:14:45.429 INFO ProgressMeter - chr16:177411 97.1 132308000 1362524.9
00:14:55.432 INFO ProgressMeter - chr16:1938264 97.3 132734000 1364569.1
00:15:05.618 INFO ProgressMeter - chr16:3044240 97.4 132835000 1363228.2
00:15:15.718 INFO ProgressMeter - chr16:4859869 97.6 132967000 1362229.8
00:15:25.741 INFO ProgressMeter - chr16:11581936 97.8 133119000 1361456.8
00:15:42.551 INFO ProgressMeter - chr16:14482482 98.1 133238000 1358780.4
00:15:52.555 INFO ProgressMeter - chr16:18358230 98.2 133366000 1357777.1
00:16:02.587 INFO ProgressMeter - chr16:21626864 98.4 133507000 1356902.8
00:16:12.605 INFO ProgressMeter - chr16:23838314 98.6 133672000 1356278.2
00:16:22.637 INFO ProgressMeter - chr16:27635161 98.7 133856000 1355845.0
00:16:32.884 INFO ProgressMeter - chr16:28985731 98.9 133996000 1354919.2
00:16:42.935 INFO ProgressMeter - chr16:29833986 99.1 134123000 1353910.0
00:16:54.560 INFO ProgressMeter - chr16:30092430 99.3 134158000 1351620.1
00:17:04.596 INFO ProgressMeter - chr16:31276688 99.4 134311000 1350884.8
00:17:14.644 INFO ProgressMeter - chr16:48567943 99.6 134451000 1350019.0
00:17:24.653 INFO ProgressMeter - chr16:55531239 99.8 134622000 1349475.6
00:17:34.824 INFO ProgressMeter - chr16:58518754 99.9 134725000 1348217.3
00:17:44.925 INFO ProgressMeter - chr16:67656863 100.1 134825000 1346948.6
00:17:54.929 INFO ProgressMeter - chr16:69696672 100.3 134934000 1345795.8
00:18:04.954 INFO ProgressMeter - chr16:71927839 100.4 135027000 1344482.9
00:18:16.269 INFO ProgressMeter - chr16:74324522 100.6 135049000 1342181.9
00:18:26.273 INFO ProgressMeter - chr16:83901225 100.8 135253000 1341985.4
00:18:36.307 INFO ProgressMeter - chr16:88062416 101.0 135393000 1341149.1
00:18:46.565 INFO ProgressMeter - chr16:89871808 101.1 135513000 1340068.3
00:19:01.515 INFO ProgressMeter - chr17:61561 101.4 135587000 1337504.5
00:19:11.530 INFO ProgressMeter - chr17:5539453 101.5 135903000 1338417.9
00:19:21.549 INFO ProgressMeter - chr17:8925265 101.7 136090000 1338059.1
00:19:31.599 INFO ProgressMeter - chr17:16429565 101.9 136340000 1338313.1
00:19:41.602 INFO ProgressMeter - chr17:21013996 102.0 136507000 1337763.1
00:19:51.652 INFO ProgressMeter - chr17:29095897 102.2 136660000 1337067.7
00:20:01.669 INFO ProgressMeter - chr17:30466991 102.4 136819000 1336440.4
00:20:11.735 INFO ProgressMeter - chr17:35368118 102.5 136963000 1335658.2
00:20:21.741 INFO ProgressMeter - chr17:38238319 102.7 137138000 1335193.4
00:20:31.756 INFO ProgressMeter - chr17:40328085 102.9 137282000 1334427.0
00:20:42.491 INFO ProgressMeter - chr17:42274555 103.1 137365000 1332915.4
00:20:52.529 INFO ProgressMeter - chr17:44262700 103.2 137527000 1332324.5
00:21:02.588 INFO ProgressMeter - chr17:45396935 103.4 137693000 1331769.7
00:21:12.685 INFO ProgressMeter - chr17:47660033 103.6 137886000 1331469.2
00:21:22.815 INFO ProgressMeter - chr17:50133926 103.7 138060000 1330979.5
00:21:32.834 INFO ProgressMeter - chr17:58001227 103.9 138200000 1330187.9
00:21:42.864 INFO ProgressMeter - chr17:59646919 104.1 138252000 1328550.7
00:21:52.933 INFO ProgressMeter - chr17:63238776 104.2 138439000 1328205.8
00:22:02.939 INFO ProgressMeter - chr17:64772044 104.4 138602000 1327645.4
00:22:13.047 INFO ProgressMeter - chr17:69319606 104.6 138804000 1327438.2
00:22:23.062 INFO ProgressMeter - chr17:75488773 104.7 138944000 1326659.6
00:22:33.204 INFO ProgressMeter - chr17:76480675 104.9 139026000 1325303.3
00:22:44.919 INFO ProgressMeter - chr17:77488811 105.1 139111000 1323650.0
00:22:54.978 INFO ProgressMeter - chr17:80325160 105.3 139280000 1323147.3
00:23:04.988 INFO ProgressMeter - chr17:81888559 105.4 139427000 1322447.9
00:23:21.528 INFO ProgressMeter - chr18:102375 105.7 139506000 1319746.5
00:23:31.545 INFO ProgressMeter - chr18:21669289 105.9 139954000 1321896.8
00:23:41.562 INFO ProgressMeter - chr18:37085742 106.0 140134000 1321513.1
00:23:51.599 INFO ProgressMeter - chr18:50914571 106.2 140312000 1321107.6
00:24:01.636 INFO ProgressMeter - chr18:63263395 106.4 140484000 1320647.0
00:24:11.666 INFO ProgressMeter - chr18:77051123 106.5 140709000 1320686.9
00:24:22.821 INFO ProgressMeter - chr19:60699 106.7 140817000 1319398.0
00:24:32.834 INFO ProgressMeter - chr19:3177925 106.9 141167000 1320612.5
00:24:42.875 INFO ProgressMeter - chr19:6221668 107.1 141356000 1320313.5
00:24:53.021 INFO ProgressMeter - chr19:9425170 107.2 141494000 1319518.4
00:25:03.058 INFO ProgressMeter - chr19:11576560 107.4 141628000 1318711.0
00:25:13.062 INFO ProgressMeter - chr19:14574659 107.6 141766000 1317949.6
00:25:23.097 INFO ProgressMeter - chr19:17275190 107.7 141908000 1317221.7
00:25:33.156 INFO ProgressMeter - chr19:18538413 107.9 142047000 1316463.3
00:25:43.366 INFO ProgressMeter - chr19:19660067 108.1 142176000 1315584.2
00:25:53.445 INFO ProgressMeter - chr19:33815388 108.2 142321000 1314881.9
00:26:03.469 INFO ProgressMeter - chr19:36234582 108.4 142417000 1313741.1
00:26:13.471 INFO ProgressMeter - chr19:38417167 108.6 142471000 1312221.4
00:26:23.582 INFO ProgressMeter - chr19:41397247 108.7 142608000 1311447.7
00:26:33.688 INFO ProgressMeter - chr19:45059314 108.9 142721000 1310457.2
00:26:43.689 INFO ProgressMeter - chr19:48220742 109.1 142835000 1309499.8
00:26:53.692 INFO ProgressMeter - chr19:49497550 109.2 143047000 1309441.8
00:27:03.790 INFO ProgressMeter - chr19:51644017 109.4 143138000 1308259.3
00:27:13.901 INFO ProgressMeter - chr19:54173657 109.6 143252000 1307287.7
00:27:23.945 INFO ProgressMeter - chr19:54596234 109.7 143315000 1305867.7
00:27:33.953 INFO ProgressMeter - chr19:58393094 109.9 143449000 1305105.1
00:27:43.973 INFO ProgressMeter - chr20:3800573 110.1 143669000 1305123.9
00:27:53.979 INFO ProgressMeter - chr20:18517085 110.2 143940000 1305607.8
00:28:04.027 INFO ProgressMeter - chr20:32460536 110.4 144227000 1306226.7
00:28:14.055 INFO ProgressMeter - chr20:35869551 110.6 144388000 1305708.4
00:28:24.077 INFO ProgressMeter - chr20:41489965 110.7 144556000 1305256.1
00:28:34.108 INFO ProgressMeter - chr20:45952705 110.9 144701000 1304596.0
00:28:44.114 INFO ProgressMeter - chr20:48809208 111.1 144873000 1304186.0
00:28:54.139 INFO ProgressMeter - chr20:53582471 111.3 145073000 1304024.8
00:29:04.167 INFO ProgressMeter - chr20:58909747 111.4 145219000 1303379.1
00:29:14.244 INFO ProgressMeter - chr20:62807519 111.6 145330000 1302412.1
00:29:26.209 INFO ProgressMeter - chr21:5023620 111.8 145411000 1300813.3
00:29:36.211 INFO ProgressMeter - chr21:8259401 112.0 147036000 1313391.5
00:29:48.404 INFO ProgressMeter - chr21:8397347 112.2 147818000 1317984.3
00:29:58.405 INFO ProgressMeter - chr21:8441389 112.3 148424000 1321423.6
00:30:13.193 INFO ProgressMeter - chr21:15777849 112.6 149407000 1327262.9
00:30:23.254 INFO ProgressMeter - chr21:33528280 112.7 149667000 1327595.0
00:30:33.274 INFO ProgressMeter - chr21:37231191 112.9 149853000 1327278.7
00:30:43.329 INFO ProgressMeter - chr21:41325911 113.1 150048000 1327036.2
00:30:53.343 INFO ProgressMeter - chr21:44327095 113.2 150156000 1326034.0
00:31:03.554 INFO ProgressMeter - chr21:46322359 113.4 150254000 1324908.2
00:31:21.367 INFO ProgressMeter - chr22:10767913 113.7 150284000 1321712.9
00:31:31.413 INFO ProgressMeter - chr22:24543098 113.9 150622000 1322737.6
00:31:41.437 INFO ProgressMeter - chr22:30027591 114.0 150827000 1322597.4
00:31:51.457 INFO ProgressMeter - chr22:32493196 114.2 150999000 1322169.4
00:32:01.492 INFO ProgressMeter - chr22:36926073 114.4 151171000 1321739.9
00:32:11.553 INFO ProgressMeter - chr22:38495909 114.5 151355000 1321411.3
00:32:21.612 INFO ProgressMeter - chr22:40804027 114.7 151552000 1321197.6
00:32:31.614 INFO ProgressMeter - chr22:43929689 114.9 151716000 1320707.8
00:32:41.651 INFO ProgressMeter - chr22:50220326 115.0 151894000 1320334.6
00:32:55.186 INFO ProgressMeter - chrX:290691 115.3 151933000 1318089.0
00:33:05.201 INFO ProgressMeter - chrX:24204590 115.4 152353000 1319821.7
00:33:15.253 INFO ProgressMeter - chrX:45089837 115.6 152580000 1319872.4
00:33:25.307 INFO ProgressMeter - chrX:53551277 115.8 152745000 1319387.4
00:33:35.316 INFO ProgressMeter - chrX:56184763 115.9 152909000 1318903.6
00:33:45.342 INFO ProgressMeter - chrX:71536300 116.1 153117000 1318796.7
00:33:55.356 INFO ProgressMeter - chrX:78281634 116.3 153431000 1319604.4
00:34:05.411 INFO ProgressMeter - chrX:102780922 116.4 153569000 1318890.2
00:34:15.418 INFO ProgressMeter - chrX:118452761 116.6 153706000 1318178.6
00:34:25.426 INFO ProgressMeter - chrX:120455475 116.8 153813000 1317212.0
00:34:35.435 INFO ProgressMeter - chrX:135540593 116.9 153968000 1316658.7
00:34:45.530 INFO ProgressMeter - chrX:151406122 117.1 154099000 1315885.4
00:34:55.728 INFO ProgressMeter - chrX:154467977 117.3 154220000 1315010.1
00:35:09.774 INFO ProgressMeter - chrY:300240 117.5 154318000 1313224.3
00:35:17.957 INFO SplitNCigarReads - 0 read(s) filtered by: AllowAllReadsReadFilter

00:35:27.075 INFO OverhangFixingManager - Overhang Fixing Manager saved 38946 reads in the first pass
00:35:27.080 INFO SplitNCigarReads - Starting traversal pass 2
00:35:27.094 INFO ProgressMeter - chr1:14714 117.8 155708000 1321806.0
00:35:37.115 INFO ProgressMeter - chr1:8388824 118.0 156135000 1323554.5
00:35:47.130 INFO ProgressMeter - chr1:12208452 118.1 156307000 1323140.1
00:35:57.161 INFO ProgressMeter - chr1:17359744 118.3 156468000 1322631.2
00:36:07.200 INFO ProgressMeter - chr1:21727163 118.5 156637000 1322189.8
00:36:17.237 INFO ProgressMeter - chr1:25335453 118.6 156794000 1321648.8
00:36:27.241 INFO ProgressMeter - chr1:27613226 118.8 156952000 1321123.8
00:36:37.248 INFO ProgressMeter - chr1:29118574 119.0 157135000 1320810.1
00:36:47.313 INFO ProgressMeter - chr1:32949653 119.1 157292000 1320268.0
00:36:57.394 INFO ProgressMeter - chr1:36358250 119.3 157435000 1319607.3
00:37:12.196 INFO ProgressMeter - chr1:36475956 119.6 157495000 1317386.3
00:37:22.200 INFO ProgressMeter - chr1:40072163 119.7 157641000 1316771.1
00:37:32.210 INFO ProgressMeter - chr1:42696790 119.9 157816000 1316398.2
00:37:42.244 INFO ProgressMeter - chr1:45686443 120.1 157925000 1315472.4
00:37:52.365 INFO ProgressMeter - chr1:52313707 120.2 158062000 1314766.2
00:38:02.405 INFO ProgressMeter - chr1:55172497 120.4 158160000 1313752.7
00:38:12.424 INFO ProgressMeter - chr1:64872839 120.6 158274000 1312878.7
00:38:32.153 INFO ProgressMeter - chr1:67424222 120.9 158383000 1310209.2
00:38:42.170 INFO ProgressMeter - chr1:87384343 121.1 158601000 1310203.3
00:38:52.181 INFO ProgressMeter - chr1:90000472 121.2 158789000 1309950.6
00:39:02.198 INFO ProgressMeter - chr1:97141181 121.4 158930000 1309310.5
00:39:12.339 INFO ProgressMeter - chr1:100271793 121.6 159086000 1308773.3
00:39:22.472 INFO ProgressMeter - chr1:109188200 121.7 159237000 1308198.0
00:39:44.602 INFO ProgressMeter - chr1:110895271 122.1 159321000 1304934.0
00:39:54.689 INFO ProgressMeter - chr1:114464833 122.3 159491000 1304530.3
00:40:04.724 INFO ProgressMeter - chr1:119157855 122.4 159675000 1304251.1
00:40:14.775 INFO ProgressMeter - chr1:120524039 122.6 159847000 1303871.7
00:40:24.818 INFO ProgressMeter - chr1:120997461 122.8 159991000 1303266.9
00:40:34.820 INFO ProgressMeter - chr1:145394018 122.9 160231000 1303451.9
00:40:53.203 INFO ProgressMeter - chr1:145992881 123.2 160279000 1300600.8
00:41:03.206 INFO ProgressMeter - chr1:146260118 123.4 160474000 1300424.1
00:41:13.219 INFO ProgressMeter - chr1:148652577 123.6 160664000 1300205.2
00:41:23.249 INFO ProgressMeter - chr1:149616329 123.7 160884000 1300226.7
00:41:33.265 INFO ProgressMeter - chr1:150575602 123.9 161018000 1299556.4
00:41:43.309 INFO ProgressMeter - chr1:151167608 124.1 161178000 1299092.5
00:42:01.548 INFO ProgressMeter - chr1:151406282 124.4 161212000 1296190.8
00:42:11.594 INFO ProgressMeter - chr1:153942285 124.5 161348000 1295540.2
00:42:21.734 INFO ProgressMeter - chr1:155139907 124.7 161483000 1294867.1
00:42:31.808 INFO ProgressMeter - chr1:156335724 124.9 161587000 1293958.9
00:42:41.835 INFO ProgressMeter - chr1:158845638 125.0 161717000 1293269.2
00:42:51.900 INFO ProgressMeter - chr1:160550563 125.2 161881000 1292846.4
00:43:01.914 INFO ProgressMeter - chr1:161519755 125.4 162031000 1292321.8
00:43:18.894 INFO ProgressMeter - chr1:161589584 125.7 162083000 1289825.2
00:43:28.913 INFO ProgressMeter - chr1:167633579 125.8 162335000 1290116.2
00:43:38.947 INFO ProgressMeter - chr1:171319076 126.0 162484000 1289586.6
00:43:49.022 INFO ProgressMeter - chr1:174644731 126.2 162641000 1289114.5
00:43:59.037 INFO ProgressMeter - chr1:178569195 126.3 162771000 1288440.3
00:44:09.070 INFO ProgressMeter - chr1:183545492 126.5 162970000 1288310.2
00:44:26.506 INFO ProgressMeter - chr1:183573231 126.8 163009000 1285665.0
00:44:36.551 INFO ProgressMeter - chr1:192129791 127.0 163234000 1285741.9
00:44:46.572 INFO ProgressMeter - chr1:198649205 127.1 163376000 1285169.7
00:44:56.600 INFO ProgressMeter - chr1:198733863 127.3 163530000 1284692.3
00:45:06.642 INFO ProgressMeter - chr1:202559250 127.5 163640000 1283868.2
00:45:16.683 INFO ProgressMeter - chr1:203798007 127.6 163784000 1283313.0
00:45:26.709 INFO ProgressMeter - chr1:206498502 127.8 163906000 1282589.6
00:45:41.942 INFO ProgressMeter - chr1:206558391 128.0 163909000 1280070.0
00:45:51.964 INFO ProgressMeter - chr1:207685432 128.2 164057000 1279556.7
00:46:02.002 INFO ProgressMeter - chr1:215616316 128.4 164229000 1279229.0
00:46:12.059 INFO ProgressMeter - chr1:224398892 128.5 164361000 1278587.9
00:46:22.120 INFO ProgressMeter - chr1:226728708 128.7 164487000 1277901.1
00:46:32.239 INFO ProgressMeter - chr1:230899891 128.9 164599000 1277097.9
00:46:42.261 INFO ProgressMeter - chr1:235124952 129.1 164723000 1276405.8
00:47:05.705 INFO ProgressMeter - chr1:235810474 129.4 164820000 1273302.3
00:47:15.729 INFO ProgressMeter - chr1:244854376 129.6 164986000 1272941.7
00:47:25.749 INFO ProgressMeter - chr1:248823243 129.8 165130000 1272413.3
00:47:47.412 INFO ProgressMeter - chr2:218383 130.1 165136000 1268929.3
00:47:57.421 INFO ProgressMeter - chr2:23863451 130.3 165502000 1270113.6
00:48:07.439 INFO ProgressMeter - chr2:28160419 130.5 165718000 1270143.7
00:48:17.503 INFO ProgressMeter - chr2:36560582 130.6 165904000 1269936.7
00:48:27.530 INFO ProgressMeter - chr2:40384762 130.8 166111000 1269896.7
00:48:37.550 INFO ProgressMeter - chr2:45909973 131.0 166284000 1269598.4
00:48:47.597 INFO ProgressMeter - chr2:55235456 131.1 166463000 1269342.2
00:48:57.649 INFO ProgressMeter - chr2:63219186 131.3 166608000 1268827.0
00:49:07.677 INFO ProgressMeter - chr2:65074565 131.5 166743000 1268240.8
00:49:27.148 INFO ProgressMeter - chr2:70150308 131.8 167013000 1267166.7
00:49:37.224 INFO ProgressMeter - chr2:74152008 132.0 167176000 1266789.4
00:49:47.301 INFO ProgressMeter - chr2:85386937 132.1 167339000 1266412.8
00:49:57.360 INFO ProgressMeter - chr2:87722330 132.3 167483000 1265896.5
00:50:07.481 INFO ProgressMeter - chr2:96278677 132.5 167592000 1265107.5
00:50:17.564 INFO ProgressMeter - chr2:97836252 132.6 167692000 1264258.5
00:50:27.611 INFO ProgressMeter - chr2:100007338 132.8 167852000 1263869.3
00:50:45.053 INFO ProgressMeter - chr2:101305504 133.1 167936000 1261739.9
00:50:55.110 INFO ProgressMeter - chr2:105893575 133.3 168088000 1261293.5
00:51:05.113 INFO ProgressMeter - chr2:112378568 133.4 168242000 1260871.7
00:51:15.142 INFO ProgressMeter - chr2:119979978 133.6 168400000 1260477.0
00:51:25.202 INFO ProgressMeter - chr2:127322146 133.8 168542000 1259958.5
00:51:35.244 INFO ProgressMeter - chr2:134362846 133.9 168668000 1259324.8
00:51:45.264 INFO ProgressMeter - chr2:143097785 134.1 168796000 1258711.0
00:52:01.540 INFO ProgressMeter - chr2:143289617 134.4 168874000 1256750.6
00:52:11.568 INFO ProgressMeter - chr2:148260095 134.5 169215000 1257723.8
00:52:21.575 INFO ProgressMeter - chr2:157868623 134.7 169366000 1257287.6
00:52:31.607 INFO ProgressMeter - chr2:161504055 134.9 169531000 1256952.3
00:52:41.627 INFO ProgressMeter - chr2:169841234 135.0 169657000 1256330.9
00:52:51.633 INFO ProgressMeter - chr2:174368828 135.2 169766000 1255587.5
00:53:10.269 INFO ProgressMeter - chr2:174617456 135.5 169835000 1253219.0
00:53:20.284 INFO ProgressMeter - chr2:179319251 135.7 169983000 1252768.0
00:53:30.318 INFO ProgressMeter - chr2:190272859 135.9 170153000 1252477.2
00:53:40.370 INFO ProgressMeter - chr2:197007815 136.0 170366000 1252500.5
00:53:50.394 INFO ProgressMeter - chr2:197420884 136.2 170551000 1252322.5
00:54:00.520 INFO ProgressMeter - chr2:201273300 136.4 170717000 1251989.9
00:54:17.578 INFO ProgressMeter - chr2:201478189 136.6 170763000 1249721.6
00:54:27.606 INFO ProgressMeter - chr2:208308889 136.8 170919000 1249335.1
00:54:37.611 INFO ProgressMeter - chr2:218263757 137.0 171130000 1249354.7
00:54:47.642 INFO ProgressMeter - chr2:223817755 137.1 171229000 1248553.5
00:54:57.730 INFO ProgressMeter - chr2:229805949 137.3 171383000 1248146.2
00:55:07.864 INFO ProgressMeter - chr2:231711359 137.5 171552000 1247842.1
00:55:31.386 INFO ProgressMeter - chr2:234493755 137.9 171665000 1245113.5
00:55:41.402 INFO ProgressMeter - chr2:241080488 138.0 171817000 1244708.9
00:56:06.165 INFO ProgressMeter - chr3:2186530 138.5 171876000 1241424.6
00:56:16.194 INFO ProgressMeter - chr3:14131641 138.6 172244000 1242582.4
00:56:26.221 INFO ProgressMeter - chr3:15738525 138.8 172457000 1242620.9
00:56:36.221 INFO ProgressMeter - chr3:15738551 139.0 172794000 1243555.8
00:56:46.229 INFO ProgressMeter - chr3:15738573 139.1 173132000 1244494.3
00:56:56.235 INFO ProgressMeter - chr3:15738596 139.3 173473000 1245452.5
00:57:06.257 INFO ProgressMeter - chr3:15738617 139.5 173812000 1246391.7
00:57:18.949 INFO ProgressMeter - chr3:15738617 139.7 173835000 1244668.6
00:57:28.953 INFO ProgressMeter - chr3:15738619 139.8 174171000 1245587.4
00:57:38.976 INFO ProgressMeter - chr3:15738621 140.0 174506000 1246494.0
00:57:49.027 INFO ProgressMeter - chr3:17380136 140.2 174778000 1246944.8
00:58:07.063 INFO ProgressMeter - chr3:18424744 140.5 174831000 1244653.6
00:58:17.084 INFO ProgressMeter - chr3:28265197 140.6 174972000 1244178.1
00:58:27.161 INFO ProgressMeter - chr3:36838918 140.8 175175000 1244135.8
00:58:37.193 INFO ProgressMeter - chr3:39413554 141.0 175294000 1243504.3
00:58:47.203 INFO ProgressMeter - chr3:44819084 141.1 175452000 1243153.8
00:58:57.228 INFO ProgressMeter - chr3:47423553 141.3 175565000 1242483.6
00:59:07.307 INFO ProgressMeter - chr3:49268048 141.5 175650000 1241609.1
00:59:32.741 INFO ProgressMeter - chr3:50121896 141.9 175745000 1238569.3
00:59:42.898 INFO ProgressMeter - chr3:52543905 142.1 175864000 1237931.1
00:59:52.943 INFO ProgressMeter - chr3:57571688 142.2 175986000 1237331.7
01:00:02.949 INFO ProgressMeter - chr3:67640797 142.4 176147000 1237013.3
01:00:13.001 INFO ProgressMeter - chr3:71464797 142.6 176295000 1236597.7
01:00:23.114 INFO ProgressMeter - chr3:97918241 142.7 176457000 1236272.5
01:00:33.145 INFO ProgressMeter - chr3:105685223 142.9 176558000 1235532.9
01:00:54.735 INFO ProgressMeter - chr3:111603718 143.3 176684000 1233309.1
01:01:04.768 INFO ProgressMeter - chr3:114557013 143.4 176822000 1232833.4
01:01:14.790 INFO ProgressMeter - chr3:122440483 143.6 177020000 1232778.2
01:01:24.813 INFO ProgressMeter - chr3:125259769 143.8 177142000 1232194.3
01:01:34.883 INFO ProgressMeter - chr3:129233550 143.9 177267000 1231626.0
01:01:45.042 INFO ProgressMeter - chr3:133626416 144.1 177379000 1230956.0
01:01:55.062 INFO ProgressMeter - chr3:134971708 144.3 177528000 1230563.9
01:02:19.038 INFO ProgressMeter - chr3:141418970 144.7 177630000 1227869.9
01:02:29.090 INFO ProgressMeter - chr3:149154304 144.8 177778000 1227471.4
01:02:39.124 INFO ProgressMeter - chr3:152304124 145.0 177938000 1227159.2
01:02:49.168 INFO ProgressMeter - chr3:153162795 145.2 178094000 1226818.7
01:02:59.188 INFO ProgressMeter - chr3:161429278 145.3 178239000 1226406.7
01:03:09.249 INFO ProgressMeter - chr3:172094046 145.5 178354000 1225783.7
01:03:19.359 INFO ProgressMeter - chr3:182885955 145.7 178537000 1225622.1
01:03:39.929 INFO ProgressMeter - chr3:183859202 146.0 178582000 1223052.5
01:03:49.929 INFO ProgressMeter - chr3:187030622 146.2 178707000 1222513.2
01:03:59.943 INFO ProgressMeter - chr3:195326238 146.3 178922000 1222588.1
01:04:09.956 INFO ProgressMeter - chr3:197697227 146.5 179061000 1222144.4
01:04:39.253 INFO ProgressMeter - chr4:41192 147.0 179134000 1218581.4
01:04:49.257 INFO ProgressMeter - chr4:10442268 147.2 179456000 1219388.8
01:04:59.271 INFO ProgressMeter - chr4:37989551 147.3 179789000 1220267.6
01:05:09.312 INFO ProgressMeter - chr4:42486284 147.5 179989000 1220239.0
01:05:19.318 INFO ProgressMeter - chr4:53985332 147.7 180143000 1219903.9
01:05:29.362 INFO ProgressMeter - chr4:73113031 147.8 180292000 1219530.4
01:05:39.387 INFO ProgressMeter - chr4:79913799 148.0 180469000 1219349.6
01:05:49.464 INFO ProgressMeter - chr4:85476649 148.2 180616000 1218959.6
01:05:59.510 INFO ProgressMeter - chr4:89093753 148.3 180767000 1218601.6
01:06:09.530 INFO ProgressMeter - chr4:101138239 148.5 180952000 1218477.0
01:06:22.893 INFO ProgressMeter - chr4:101300623 148.7 180984000 1216867.5
01:06:32.912 INFO ProgressMeter - chr4:105147926 148.9 181125000 1216449.8
01:06:42.926 INFO ProgressMeter - chr4:112320108 149.1 181314000 1216355.7
01:06:52.951 INFO ProgressMeter - chr4:120768217 149.2 181452000 1215918.7
01:07:02.968 INFO ProgressMeter - chr4:129064063 149.4 181560000 1215282.7
01:07:12.978 INFO ProgressMeter - chr4:143400061 149.6 181764000 1215291.1
01:07:22.992 INFO ProgressMeter - chr4:150828274 149.7 181877000 1214691.3
01:07:39.709 INFO ProgressMeter - chr4:152626722 150.0 181937000 1212835.0
01:07:49.729 INFO ProgressMeter - chr4:159294383 150.2 182103000 1212591.7
01:07:59.782 INFO ProgressMeter - chr4:173244665 150.3 182248000 1212204.9
01:08:09.781 INFO ProgressMeter - chr4:184769531 150.5 182371000 1211679.8
01:08:36.305 INFO ProgressMeter - chr5:198737 151.0 182446000 1208628.3
01:08:46.347 INFO ProgressMeter - chr5:35876384 151.1 182800000 1209632.2
01:08:56.349 INFO ProgressMeter - chr5:39202597 151.3 183029000 1209813.1
01:09:06.368 INFO ProgressMeter - chr5:50708920 151.5 183209000 1209667.6
01:09:16.387 INFO ProgressMeter - chr5:56927880 151.6 183421000 1209733.6
01:09:26.498 INFO ProgressMeter - chr5:67158825 151.8 183599000 1209563.2
01:09:36.525 INFO ProgressMeter - chr5:70156927 152.0 183791000 1209496.5
01:09:49.564 INFO ProgressMeter - chr5:70816500 152.2 183958000 1208866.7
01:09:59.630 INFO ProgressMeter - chr5:75699220 152.3 184199000 1209117.4
01:10:17.920 INFO ProgressMeter - chr5:80173070 152.6 184352000 1207705.1
01:10:27.968 INFO ProgressMeter - chr5:87334159 152.8 184517000 1207461.4
01:10:37.986 INFO ProgressMeter - chr5:94582388 153.0 184704000 1207365.9
01:10:48.042 INFO ProgressMeter - chr5:97087522 153.1 184835000 1206900.0
01:10:58.050 INFO ProgressMeter - chr5:108016599 153.3 184972000 1206480.5
01:11:08.069 INFO ProgressMeter - chr5:113272961 153.5 185141000 1206269.0
01:11:18.113 INFO ProgressMeter - chr5:122827455 153.6 185287000 1205905.0
01:11:32.694 INFO ProgressMeter - chr5:126461015 153.9 185309000 1204143.7
01:11:42.755 INFO ProgressMeter - chr5:132422983 154.1 185451000 1203754.8
01:11:52.764 INFO ProgressMeter - chr5:134727209 154.2 185597000 1203399.4
01:12:02.766 INFO ProgressMeter - chr5:139367591 154.4 185729000 1202955.0
01:12:12.858 INFO ProgressMeter - chr5:141931276 154.6 185841000 1202370.6
01:12:22.936 INFO ProgressMeter - chr5:146251579 154.7 186099000 1202732.9
01:12:32.958 INFO ProgressMeter - chr5:150401943 154.9 186213000 1202171.8
01:12:47.881 INFO ProgressMeter - chr5:150405164 155.1 186232000 1200367.0
01:12:57.991 INFO ProgressMeter - chr5:154814485 155.3 186394000 1200107.8
01:13:07.995 INFO ProgressMeter - chr5:160099447 155.5 186564000 1199914.2
01:13:18.008 INFO ProgressMeter - chr5:169932916 155.6 186711000 1199572.1
01:13:28.015 INFO ProgressMeter - chr5:172090499 155.8 186842000 1199128.8
01:13:38.054 INFO ProgressMeter - chr5:176946965 156.0 187017000 1198964.5
01:13:48.078 INFO ProgressMeter - chr5:178210762 156.1 187115000 1198309.3
01:14:05.040 INFO ProgressMeter - chr5:179577107 156.4 187133000 1196258.8
01:14:31.983 INFO ProgressMeter - chr6:140071 156.9 187296000 1193873.7
01:14:41.992 INFO ProgressMeter - chr6:16578165 157.0 187789000 1195744.7
01:14:51.992 INFO ProgressMeter - chr6:24909584 157.2 188132000 1196658.8
01:15:02.084 INFO ProgressMeter - chr6:29725519 157.4 188407000 1197127.3
01:15:12.099 INFO ProgressMeter - chr6:30590870 157.5 188639000 1197331.5
01:15:22.119 INFO ProgressMeter - chr6:31271259 157.7 188767000 1196875.3
01:15:32.182 INFO ProgressMeter - chr6:31465280 157.9 188906000 1196484.3
01:15:42.283 INFO ProgressMeter - chr6:31971342 158.1 189008000 1195855.2
01:16:00.897 INFO ProgressMeter - chr6:32927943 158.4 189107000 1194137.6
01:16:10.954 INFO ProgressMeter - chr6:35087086 158.5 189254000 1193802.3
01:16:20.967 INFO ProgressMeter - chr6:36598968 158.7 189402000 1193479.5
01:16:30.984 INFO ProgressMeter - chr6:41190341 158.9 189599000 1193465.5
01:16:41.027 INFO ProgressMeter - chr6:42691465 159.0 189731000 1193039.4
01:16:51.152 INFO ProgressMeter - chr6:44296230 159.2 189809000 1192264.6
01:17:14.492 INFO ProgressMeter - chr6:52995646 159.6 190028000 1190730.7
01:17:24.504 INFO ProgressMeter - chr6:52995743 159.8 190348000 1191490.0
01:17:34.517 INFO ProgressMeter - chr6:52995832 159.9 190662000 1192210.1
01:17:44.834 INFO ProgressMeter - chr6:56842838 160.1 190906000 1192453.7
01:18:08.507 INFO ProgressMeter - chr6:70679173 160.5 191013000 1190188.9
01:18:18.519 INFO ProgressMeter - chr6:75678178 160.7 191229000 1190297.3
01:18:28.613 INFO ProgressMeter - chr6:89160231 160.8 191430000 1190301.9
01:18:38.614 INFO ProgressMeter - chr6:99410845 161.0 191570000 1189939.1
01:18:48.614 INFO ProgressMeter - chr6:108647116 161.2 191729000 1189695.1
01:18:58.634 INFO ProgressMeter - chr6:111714523 161.3 191870000 1189337.6
01:19:16.745 INFO ProgressMeter - chr6:116122322 161.6 191929000 1187481.4
01:19:26.776 INFO ProgressMeter - chr6:126002632 161.8 192072000 1187138.2
01:19:36.832 INFO ProgressMeter - chr6:132748067 162.0 192236000 1186922.3
01:19:46.983 INFO ProgressMeter - chr6:138918697 162.1 192380000 1186572.0
01:19:56.984 INFO ProgressMeter - chr6:144187871 162.3 192536000 1186314.5
01:20:07.086 INFO ProgressMeter - chr6:145944440 162.5 192660000 1185848.4
01:20:17.175 INFO ProgressMeter - chr6:152220960 162.6 192790000 1185421.8
01:20:38.989 INFO ProgressMeter - chr6:154809367 163.0 192865000 1183237.7
01:20:49.029 INFO ProgressMeter - chr6:158815980 163.2 193022000 1182986.4
01:20:59.053 INFO ProgressMeter - chr6:160065402 163.3 193187000 1182786.6
01:21:09.126 INFO ProgressMeter - chr6:167925031 163.5 193367000 1182673.0
01:21:37.895 INFO ProgressMeter - chr7:10435 164.0 193418000 1179525.8
01:21:47.931 INFO ProgressMeter - chr7:7274037 164.1 193796000 1180626.7
01:21:57.982 INFO ProgressMeter - chr7:23602990 164.3 194006000 1180701.2
01:22:07.984 INFO ProgressMeter - chr7:28447957 164.5 194166000 1180477.3
01:22:17.998 INFO ProgressMeter - chr7:32530923 164.6 194343000 1180355.6
01:22:28.014 INFO ProgressMeter - chr7:36657263 164.8 194507000 1180155.2
01:22:38.023 INFO ProgressMeter - chr7:37762104 165.0 194657000 1179871.1
01:22:48.133 INFO ProgressMeter - chr7:44576050 165.2 194834000 1179739.0
01:22:58.134 INFO ProgressMeter - chr7:50690323 165.3 195025000 1179704.9
01:23:08.146 INFO ProgressMeter - chr7:70777755 165.5 195177000 1179433.9
01:23:31.642 INFO ProgressMeter - chr7:74779364 165.9 195296000 1177366.8
01:23:41.671 INFO ProgressMeter - chr7:80638740 166.0 195511000 1177476.5
01:23:51.751 INFO ProgressMeter - chr7:92195754 166.2 195629000 1176996.3
01:24:01.765 INFO ProgressMeter - chr7:98965802 166.4 195758000 1176590.9
01:24:11.837 INFO ProgressMeter - chr7:100404079 166.5 195859000 1176011.5
01:24:21.850 INFO ProgressMeter - chr7:102582320 166.7 195951000 1175386.1
01:24:31.866 INFO ProgressMeter - chr7:105664136 166.9 196094000 1175067.2
01:24:48.897 INFO ProgressMeter - chr7:106272578 167.2 196213000 1173783.8
01:24:58.933 INFO ProgressMeter - chr7:111548388 167.3 196400000 1173728.0
01:25:09.005 INFO ProgressMeter - chr7:122138090 167.5 196545000 1173417.3
01:25:19.106 INFO ProgressMeter - chr7:129532858 167.7 196669000 1172978.7
01:25:29.139 INFO ProgressMeter - chr7:133655700 167.8 196877000 1173049.4
01:25:39.186 INFO ProgressMeter - chr7:138579558 168.0 197014000 1172695.6
01:26:01.918 INFO ProgressMeter - chr7:140117996 168.4 197164000 1170947.8
01:26:12.031 INFO ProgressMeter - chr7:142353102 168.5 197330000 1170761.7
01:26:22.096 INFO ProgressMeter - chr7:149154070 168.7 197486000 1170522.3
01:26:32.383 INFO ProgressMeter - chr7:151071129 168.9 197618000 1170115.6
01:26:42.400 INFO ProgressMeter - chr7:155680638 169.1 197738000 1169669.9
01:27:14.347 INFO ProgressMeter - chr8:64898 169.6 197828000 1166528.2
01:27:24.415 INFO ProgressMeter - chr8:22624510 169.8 198238000 1167790.4
01:27:34.415 INFO ProgressMeter - chr8:23571851 169.9 198479000 1168063.2
01:27:44.479 INFO ProgressMeter - chr8:27517719 170.1 198704000 1168234.2
01:27:54.812 INFO ProgressMeter - chr8:38242268 170.3 198842000 1167863.1
01:28:04.880 INFO ProgressMeter - chr8:47898764 170.4 199040000 1167875.0
01:28:14.919 INFO ProgressMeter - chr8:58578157 170.6 199258000 1168007.4
01:28:24.980 INFO ProgressMeter - chr8:65934242 170.8 199402000 1167703.8
01:28:34.993 INFO ProgressMeter - chr8:73804557 170.9 199565000 1167517.3
01:28:53.099 INFO ProgressMeter - chr8:81283422 171.2 199665000 1166043.8
01:29:03.109 INFO ProgressMeter - chr8:96259213 171.4 199801000 1165702.3
01:29:13.112 INFO ProgressMeter - chr8:99211056 171.6 199945000 1165409.0
01:29:23.117 INFO ProgressMeter - chr8:102284241 171.7 200141000 1165418.6
01:29:33.126 INFO ProgressMeter - chr8:118366239 171.9 200293000 1165171.8
01:29:43.154 INFO ProgressMeter - chr8:124625081 172.1 200430000 1164836.3
01:29:53.162 INFO ProgressMeter - chr8:129954161 172.2 200573000 1164538.5
01:30:07.420 INFO ProgressMeter - chr8:130124048 172.5 200602000 1163102.2
01:30:17.458 INFO ProgressMeter - chr8:133470609 172.6 200796000 1163098.7
01:30:27.510 INFO ProgressMeter - chr8:141192908 172.8 200933000 1162763.9
01:30:37.521 INFO ProgressMeter - chr8:144106432 173.0 201041000 1162266.6
01:31:03.871 INFO ProgressMeter - chr9:13489 173.4 201083000 1159565.4
01:31:13.882 INFO ProgressMeter - chr9:9442098 173.6 201674000 1161855.6
01:31:23.900 INFO ProgressMeter - chr9:9442121 173.7 202088000 1163122.0
01:31:33.910 INFO ProgressMeter - chr9:9442141 173.9 202501000 1164380.9
01:31:43.919 INFO ProgressMeter - chr9:9442162 174.1 202896000 1165534.1
01:32:01.429 INFO ProgressMeter - chr9:9442163 174.4 203053000 1164483.8
01:32:11.454 INFO ProgressMeter - chr9:15162306 174.5 203943000 1168468.2
01:32:31.955 INFO ProgressMeter - chr9:21813406 174.9 204042000 1166751.3
01:32:41.996 INFO ProgressMeter - chr9:34107523 175.0 204276000 1166972.7
01:32:52.025 INFO ProgressMeter - chr9:35851450 175.2 204417000 1166664.1
01:33:02.097 INFO ProgressMeter - chr9:40992540 175.4 204568000 1166408.5
01:33:12.098 INFO ProgressMeter - chr9:68249317 175.5 204738000 1166269.3
01:33:22.138 INFO ProgressMeter - chr9:75149951 175.7 204865000 1165881.5
01:33:43.839 INFO ProgressMeter - chr9:78024527 176.1 204968000 1164071.6
01:33:53.881 INFO ProgressMeter - chr9:86302155 176.2 205135000 1163913.7
01:34:04.021 INFO ProgressMeter - chr9:92313075 176.4 205327000 1163887.1
01:34:14.031 INFO ProgressMeter - chr9:95882271 176.6 205460000 1163540.6
01:34:24.036 INFO ProgressMeter - chr9:100098932 176.7 205580000 1163121.8
01:34:34.093 INFO ProgressMeter - chr9:111666929 176.9 205686000 1162619.0
01:34:44.122 INFO ProgressMeter - chr9:113386608 177.1 205821000 1162284.0
01:35:04.542 INFO ProgressMeter - chr9:114915019 177.4 205898000 1160488.5
01:35:14.558 INFO ProgressMeter - chr9:121821252 177.6 206052000 1160264.8
01:35:24.594 INFO ProgressMeter - chr9:125767791 177.8 206220000 1160118.1
01:35:34.811 INFO ProgressMeter - chr9:128494629 177.9 206324000 1159592.3
01:35:44.825 INFO ProgressMeter - chr9:130581219 178.1 206426000 1159078.3
01:35:54.844 INFO ProgressMeter - chr9:133020324 178.3 206587000 1158895.8
01:36:04.957 INFO ProgressMeter - chr9:135901860 178.4 206710000 1158490.4
01:36:15.062 INFO ProgressMeter - chr9:137389412 178.6 206777000 1157773.1
01:36:32.669 INFO ProgressMeter - chr9:137718475 178.9 206789000 1155941.0
01:36:50.862 INFO ProgressMeter - chr10:140030 179.2 206857000 1154364.5
01:37:00.876 INFO ProgressMeter - chr10:12101175 179.4 207314000 1155838.3
01:37:10.898 INFO ProgressMeter - chr10:17686896 179.5 207514000 1155876.9
01:37:20.949 INFO ProgressMeter - chr10:24705447 179.7 207719000 1155940.2
01:37:30.981 INFO ProgressMeter - chr10:30450500 179.9 207905000 1155899.7
01:37:41.035 INFO ProgressMeter - chr10:35440298 180.0 208060000 1155684.8
01:37:51.040 INFO ProgressMeter - chr10:45461353 180.2 208237000 1155597.6
01:38:01.051 INFO ProgressMeter - chr10:46595060 180.4 208364000 1155232.8
01:38:11.074 INFO ProgressMeter - chr10:58337563 180.5 208518000 1155016.8
01:38:21.125 INFO ProgressMeter - chr10:63207324 180.7 208651000 1154682.2
01:38:39.655 INFO ProgressMeter - chr10:68968101 181.0 208731000 1153154.0
01:38:49.689 INFO ProgressMeter - chr10:71769340 181.2 208868000 1152845.7
01:38:59.695 INFO ProgressMeter - chr10:73821720 181.3 209036000 1152712.1
01:39:09.814 INFO ProgressMeter - chr10:80138252 181.5 209209000 1152594.1
01:39:19.858 INFO ProgressMeter - chr10:87887650 181.7 209356000 1152341.2
01:39:29.929 INFO ProgressMeter - chr10:91853054 181.8 209509000 1152119.0
01:39:39.929 INFO ProgressMeter - chr10:95890857 182.0 209614000 1151640.9
01:39:55.297 INFO ProgressMeter - chr10:96616430 182.3 209648000 1150209.0
01:40:05.321 INFO ProgressMeter - chr10:100536629 182.4 209786000 1149912.1
01:40:15.324 INFO ProgressMeter - chr10:103149922 182.6 209926000 1149629.0
01:40:25.367 INFO ProgressMeter - chr10:111015989 182.8 210074000 1149385.9
01:40:35.437 INFO ProgressMeter - chr10:119515592 182.9 210250000 1149293.4
01:40:45.463 INFO ProgressMeter - chr10:124699624 183.1 210436000 1149260.4
01:40:55.591 INFO ProgressMeter - chr10:132346656 183.3 210567000 1148916.7
01:41:12.687 INFO ProgressMeter - chr10:132764307 183.6 210583000 1147220.4
01:41:28.929 INFO ProgressMeter - chr11:111804 183.8 210609000 1145672.6
01:41:38.972 INFO ProgressMeter - chr11:5225464 184.0 210960000 1146537.9
01:41:48.995 INFO ProgressMeter - chr11:5225471 184.2 211152000 1146540.5
01:41:59.017 INFO ProgressMeter - chr11:5225492 184.3 211344000 1146543.2
01:42:09.045 INFO ProgressMeter - chr11:5225493 184.5 211536000 1146545.2
01:42:19.085 INFO ProgressMeter - chr11:5225495 184.7 211728000 1146546.0
01:42:29.134 INFO ProgressMeter - chr11:5225527 184.8 211920000 1146545.8
01:42:39.159 INFO ProgressMeter - chr11:5225535 185.0 212106000 1146515.7
01:42:49.167 INFO ProgressMeter - chr11:5225538 185.2 212275000 1146395.6
01:42:59.188 INFO ProgressMeter - chr11:5225544 185.3 212457000 1146344.5
01:43:12.482 INFO ProgressMeter - chr11:5225544 185.6 212470000 1145045.8
01:43:22.508 INFO ProgressMeter - chr11:5225554 185.7 212653000 1145000.9
01:43:32.548 INFO ProgressMeter - chr11:5225566 185.9 212836000 1144954.7
01:43:42.597 INFO ProgressMeter - chr11:5225579 186.1 213016000 1144891.4
01:43:52.624 INFO ProgressMeter - chr11:5225579 186.2 213198000 1144841.3
01:44:02.656 INFO ProgressMeter - chr11:5225580 186.4 213380000 1144790.8
01:44:21.591 INFO ProgressMeter - chr11:5225580 186.7 213463000 1143300.4
01:44:31.632 INFO ProgressMeter - chr11:5225582 186.9 213645000 1143250.4
01:44:41.683 INFO ProgressMeter - chr11:5225583 187.0 213827000 1143199.6
01:44:51.689 INFO ProgressMeter - chr11:5225585 187.2 214003000 1143121.3
01:45:01.720 INFO ProgressMeter - chr11:5225592 187.4 214173000 1143008.7
01:45:11.721 INFO ProgressMeter - chr11:5225597 187.5 214350000 1142936.6
01:45:27.052 INFO ProgressMeter - chr11:5225600 187.8 214395000 1141621.1
01:45:37.065 INFO ProgressMeter - chr11:5225622 188.0 214946000 1143538.9
01:46:02.503 INFO ProgressMeter - chr11:5225645 188.4 215394000 1143343.6
01:46:12.525 INFO ProgressMeter - chr11:5225657 188.6 215845000 1144722.5
01:46:38.040 INFO ProgressMeter - chr11:5225659 189.0 216067000 1143321.3
01:46:48.059 INFO ProgressMeter - chr11:5225665 189.1 216460000 1144389.7
01:47:09.676 INFO ProgressMeter - chr11:5225668 189.5 216664000 1143290.6
01:47:19.702 INFO ProgressMeter - chr11:5225671 189.7 216962000 1143854.4
01:47:42.909 INFO ProgressMeter - chr11:5225672 190.1 217211000 1142836.7
01:47:52.920 INFO ProgressMeter - chr11:5225689 190.2 217612000 1143942.4
01:48:17.532 INFO ProgressMeter - chr11:5225695 190.6 217852000 1142739.8
01:48:27.534 INFO ProgressMeter - chr11:5225711 190.8 218213000 1143633.4
01:48:51.552 INFO ProgressMeter - chr11:5225724 191.2 218413000 1142285.2
01:49:01.565 INFO ProgressMeter - chr11:5226587 191.4 218783000 1143222.5
01:49:28.155 INFO ProgressMeter - chr11:5226598 191.8 219223000 1142875.1
01:49:39.925 INFO ProgressMeter - chr11:5226605 192.0 219656000 1143962.5
01:49:49.932 INFO ProgressMeter - chr11:5226625 192.2 220113000 1145347.7
01:50:06.593 INFO ProgressMeter - chr11:5226628 192.5 220161000 1143944.6
01:50:16.607 INFO ProgressMeter - chr11:5226647 192.6 220600000 1145232.5
01:50:43.058 INFO ProgressMeter - chr11:5226655 193.1 220962000 1144492.4
01:50:53.069 INFO ProgressMeter - chr11:5226671 193.2 221295000 1145227.6
01:51:03.075 INFO ProgressMeter - chr11:5226688 193.4 221767000 1146680.5
01:51:22.815 INFO ProgressMeter - chr11:5226693 193.7 221826000 1145037.7
01:51:32.827 INFO ProgressMeter - chr11:5226713 193.9 222296000 1146476.3
01:51:44.879 INFO ProgressMeter - chr11:5226731 194.1 222653000 1147129.1
01:52:01.694 INFO ProgressMeter - chr11:5226731 194.4 222678000 1145603.8
01:52:11.711 INFO ProgressMeter - chr11:5226748 194.5 223014000 1146347.8
01:52:37.298 INFO ProgressMeter - chr11:5226770 195.0 223246000 1145030.4
01:52:47.303 INFO ProgressMeter - chr11:5226930 195.1 223484000 1145271.7
01:52:57.307 INFO ProgressMeter - chr11:5226946 195.3 223929000 1146572.3
01:53:18.446 INFO ProgressMeter - chr11:5226957 195.7 224012000 1144931.9
01:53:28.458 INFO ProgressMeter - chr11:5226978 195.8 224422000 1146050.0
01:53:38.469 INFO ProgressMeter - chr11:5234126 196.0 224858000 1147299.0
01:53:59.856 INFO ProgressMeter - chr11:6610911 196.3 224960000 1145735.6
01:54:09.876 INFO ProgressMeter - chr11:12116815 196.5 225176000 1145861.1
01:54:19.917 INFO ProgressMeter - chr11:14887103 196.7 225338000 1145709.8
01:54:29.952 INFO ProgressMeter - chr11:31698525 196.8 225456000 1145335.8
01:54:39.979 INFO ProgressMeter - chr11:35803064 197.0 225618000 1145186.6
01:54:50.107 INFO ProgressMeter - chr11:45809796 197.2 225711000 1144677.9
01:55:00.127 INFO ProgressMeter - chr11:47551647 197.3 225857000 1144449.0
01:55:16.618 INFO ProgressMeter - chr11:47991203 197.6 225877000 1142958.6
01:55:26.642 INFO ProgressMeter - chr11:59803620 197.8 226041000 1142822.3
01:55:36.673 INFO ProgressMeter - chr11:61980122 198.0 226153000 1142423.0
01:55:46.765 INFO ProgressMeter - chr11:62709711 198.1 226304000 1142215.2
01:55:56.772 INFO ProgressMeter - chr11:64738102 198.3 226386000 1141668.0
01:56:06.780 INFO ProgressMeter - chr11:65426304 198.5 226477000 1141167.0
01:56:16.823 INFO ProgressMeter - chr11:65502792 198.6 226701000 1141333.1
01:56:35.214 INFO ProgressMeter - chr11:65503618 198.9 226792000 1140032.0
01:56:45.242 INFO ProgressMeter - chr11:65505482 199.1 227007000 1140154.9
01:56:55.252 INFO ProgressMeter - chr11:65883328 199.3 227182000 1140078.5
01:57:05.273 INFO ProgressMeter - chr11:67398599 199.4 227306000 1139745.6
01:57:15.288 INFO ProgressMeter - chr11:69097574 199.6 227404000 1139283.4
01:57:25.323 INFO ProgressMeter - chr11:72828736 199.8 227506000 1138840.1
01:57:35.411 INFO ProgressMeter - chr11:74877701 199.9 227643000 1138567.7
01:57:55.892 INFO ProgressMeter - chr11:76052143 200.3 227713000 1136976.6
01:58:05.906 INFO ProgressMeter - chr11:83258173 200.4 227875000 1136838.1
01:58:15.983 INFO ProgressMeter - chr11:93179309 200.6 228030000 1136659.1
01:58:26.046 INFO ProgressMeter - chr11:102330082 200.8 228217000 1136640.9
01:58:36.046 INFO ProgressMeter - chr11:108226245 200.9 228337000 1136295.4
01:58:46.107 INFO ProgressMeter - chr11:114449879 201.1 228459000 1135954.6
01:58:56.192 INFO ProgressMeter - chr11:118382315 201.3 228611000 1135761.1
01:59:15.601 INFO ProgressMeter - chr11:118751840 201.6 228647000 1134117.4
01:59:25.608 INFO ProgressMeter - chr11:121553347 201.8 228819000 1134032.4
01:59:35.634 INFO ProgressMeter - chr11:124626573 201.9 229003000 1134005.1
01:59:45.642 INFO ProgressMeter - chr11:128797712 202.1 229216000 1134123.1
02:00:21.552 INFO ProgressMeter - chr12:14774 202.7 229302000 1131198.8
02:00:31.564 INFO ProgressMeter - chr12:8945571 202.9 229678000 1132121.8
02:00:41.571 INFO ProgressMeter - chr12:10123117 203.0 229908000 1132324.6
02:00:51.625 INFO ProgressMeter - chr12:14438145 203.2 230149000 1132576.9
02:01:01.680 INFO ProgressMeter - chr12:25079712 203.4 230316000 1132464.7
02:01:11.774 INFO ProgressMeter - chr12:30680971 203.5 230466000 1132265.7
02:01:21.808 INFO ProgressMeter - chr12:40284027 203.7 230648000 1132229.6
02:01:31.862 INFO ProgressMeter - chr12:45403229 203.9 230789000 1131990.6
02:01:41.959 INFO ProgressMeter - chr12:48695761 204.0 230966000 1131924.5
02:01:52.014 INFO ProgressMeter - chr12:50704729 204.2 231086000 1131583.2
02:02:09.341 INFO ProgressMeter - chr12:51296590 204.5 231135000 1130224.9
02:02:19.392 INFO ProgressMeter - chr12:54298082 204.7 231276000 1129988.7
02:02:29.448 INFO ProgressMeter - chr12:56346591 204.8 231401000 1129674.4
02:02:39.500 INFO ProgressMeter - chr12:57734460 205.0 231501000 1129239.0
02:02:49.537 INFO ProgressMeter - chr12:65188175 205.2 231704000 1129307.7
02:02:59.542 INFO ProgressMeter - chr12:68657149 205.3 231839000 1129048.1
02:03:21.556 INFO ProgressMeter - chr12:75507655 205.7 232011000 1127870.5
02:03:31.711 INFO ProgressMeter - chr12:88144083 205.9 232145000 1127594.2
02:03:41.748 INFO ProgressMeter - chr12:94634580 206.0 232367000 1127756.1
02:03:51.851 INFO ProgressMeter - chr12:101406757 206.2 232485000 1127407.4
02:04:01.860 INFO ProgressMeter - chr12:104624494 206.4 232624000 1127169.7
02:04:11.860 INFO ProgressMeter - chr12:108565359 206.5 232788000 1127054.1
02:04:21.884 INFO ProgressMeter - chr12:110549814 206.7 232908000 1126723.9
02:04:38.740 INFO ProgressMeter - chr12:111486769 207.0 232942000 1125358.8
02:04:48.831 INFO ProgressMeter - chr12:113280237 207.2 233056000 1124995.5
02:04:58.872 INFO ProgressMeter - chr12:120575941 207.3 233286000 1125196.8
02:05:09.056 INFO ProgressMeter - chr12:122981242 207.5 233395000 1124801.7
02:05:19.057 INFO ProgressMeter - chr12:124912287 207.7 233506000 1124433.4
02:05:29.177 INFO ProgressMeter - chr12:132657225 207.8 233687000 1124391.7
02:05:59.228 INFO ProgressMeter - chr13:18262479 208.3 233718000 1121837.4
02:06:09.264 INFO ProgressMeter - chr13:32528310 208.5 234076000 1122654.5
02:06:19.335 INFO ProgressMeter - chr13:42924372 208.7 234299000 1122820.1
02:06:29.356 INFO ProgressMeter - chr13:46153151 208.8 234441000 1122602.1
02:06:39.417 INFO ProgressMeter - chr13:50048479 209.0 234658000 1122739.7
02:06:49.461 INFO ProgressMeter - chr13:72844976 209.2 234809000 1122563.0
02:06:59.462 INFO ProgressMeter - chr13:77700862 209.3 234986000 1122514.7
02:07:09.480 INFO ProgressMeter - chr13:99528969 209.5 235150000 1122402.9
02:07:19.523 INFO ProgressMeter - chr13:111267742 209.7 235288000 1122165.1
02:07:29.588 INFO ProgressMeter - chr13:114120119 209.8 235398000 1121792.2
02:07:52.335 INFO ProgressMeter - chr14:17151098 210.2 235409000 1119821.5
02:08:02.351 INFO ProgressMeter - chr14:24441153 210.4 235839000 1120976.8
02:08:12.357 INFO ProgressMeter - chr14:49365940 210.6 236028000 1120986.6
02:08:22.379 INFO ProgressMeter - chr14:49538793 210.7 236223000 1121023.4
02:08:32.422 INFO ProgressMeter - chr14:49572997 210.9 236419000 1121063.0
02:08:42.469 INFO ProgressMeter - chr14:49581951 211.1 236585000 1120960.1
02:08:52.481 INFO ProgressMeter - chr14:49586588 211.2 236792000 1121054.5
02:09:11.946 INFO ProgressMeter - chr14:49586599 211.5 237186000 1121197.8
02:09:21.961 INFO ProgressMeter - chr14:49586633 211.7 237742000 1122940.1
02:09:43.711 INFO ProgressMeter - chr14:49586651 212.1 238162000 1123001.0
02:09:53.721 INFO ProgressMeter - chr14:49586679 212.2 238743000 1124855.8
02:10:16.275 INFO ProgressMeter - chr14:49586682 212.6 239149000 1124776.6
02:10:26.289 INFO ProgressMeter - chr14:49586684 212.8 239736000 1126653.0
02:10:50.450 INFO ProgressMeter - chr14:49586685 213.2 240149000 1126462.1
02:11:00.465 INFO ProgressMeter - chr14:49586703 213.4 240722000 1128266.5
02:11:10.466 INFO ProgressMeter - chr14:49586714 213.5 241127000 1129282.6
02:11:28.198 INFO ProgressMeter - chr14:49586715 213.8 241149000 1127824.5
02:11:38.198 INFO ProgressMeter - chr14:49586766 214.0 241728000 1129651.9
02:12:03.464 INFO ProgressMeter - chr14:49853689 214.4 242085000 1129098.3
02:12:13.468 INFO ProgressMeter - chr14:49862561 214.6 242829000 1131688.4
02:12:33.292 INFO ProgressMeter - chr14:49862575 214.9 242986000 1130679.0
02:12:43.299 INFO ProgressMeter - chr14:49862641 215.1 243790000 1133540.5
02:13:03.785 INFO ProgressMeter - chr14:49862644 215.4 243981000 1132630.4
02:13:13.795 INFO ProgressMeter - chr14:49862670 215.6 244602000 1134634.5
02:13:35.834 INFO ProgressMeter - chr14:49862671 215.9 244965000 1134385.5
02:13:45.837 INFO ProgressMeter - chr14:49862677 216.1 245816000 1137448.2
02:14:06.690 INFO ProgressMeter - chr14:49862687 216.5 245965000 1136310.3
02:14:16.691 INFO ProgressMeter - chr14:49862717 216.6 246849000 1139516.7
02:14:37.120 INFO ProgressMeter - chr14:49862721 217.0 246960000 1138240.1
02:14:47.122 INFO ProgressMeter - chr14:49862766 217.1 247770000 1141096.6
02:15:07.635 INFO ProgressMeter - chr14:49862768 217.5 247960000 1140176.4
02:15:17.700 INFO ProgressMeter - chr14:54834072 217.6 248194000 1140372.8
02:15:27.706 INFO ProgressMeter - chr14:60287686 217.8 248372000 1140316.9
02:15:37.765 INFO ProgressMeter - chr14:64742388 218.0 248566000 1140329.8
02:15:47.798 INFO ProgressMeter - chr14:68885987 218.1 248712000 1140125.0
02:15:57.805 INFO ProgressMeter - chr14:71346317 218.3 248888000 1140060.2
02:16:14.681 INFO ProgressMeter - chr14:71361251 218.6 248893000 1138616.2
02:16:24.689 INFO ProgressMeter - chr14:74496377 218.8 249040000 1138419.9
02:16:34.744 INFO ProgressMeter - chr14:81074892 218.9 249160000 1138096.6
02:16:44.826 INFO ProgressMeter - chr14:90288856 219.1 249293000 1137830.8
02:16:54.874 INFO ProgressMeter - chr14:92608088 219.3 249459000 1137718.8
02:17:04.879 INFO ProgressMeter - chr14:95289356 219.4 249582000 1137414.8
02:17:14.941 INFO ProgressMeter - chr14:100120328 219.6 249750000 1137311.2
02:17:37.883 INFO ProgressMeter - chr14:101990993 220.0 249834000 1135716.3
02:17:47.904 INFO ProgressMeter - chr14:104791632 220.1 249967000 1135458.7
02:18:13.910 INFO ProgressMeter - chr15:20032833 220.6 250037000 1133544.9
02:18:23.932 INFO ProgressMeter - chr15:34926402 220.7 250315000 1133946.7
02:18:33.993 INFO ProgressMeter - chr15:42943494 220.9 250490000 1133878.0
02:18:44.008 INFO ProgressMeter - chr15:44715583 221.1 250657000 1133777.3
02:18:54.059 INFO ProgressMeter - chr15:50576385 221.2 250835000 1133723.4
02:19:04.091 INFO ProgressMeter - chr15:57007056 221.4 251020000 1133702.8
02:19:14.163 INFO ProgressMeter - chr15:60469596 221.6 251179000 1133561.5
02:19:24.224 INFO ProgressMeter - chr15:63777813 221.8 251357000 1133507.0
02:19:34.312 INFO ProgressMeter - chr15:66548443 221.9 251512000 1133346.7
02:19:44.313 INFO ProgressMeter - chr15:72208698 222.1 251682000 1133261.6
02:19:54.315 INFO ProgressMeter - chr15:75218275 222.3 251808000 1132978.5
02:20:10.101 INFO ProgressMeter - chr15:76881776 222.5 251853000 1131841.1
02:20:20.107 INFO ProgressMeter - chr15:81979803 222.7 252008000 1131689.5
02:20:30.108 INFO ProgressMeter - chr15:89877176 222.8 252225000 1131816.8
02:20:40.147 INFO ProgressMeter - chr15:91961295 223.0 252371000 1131622.3
02:20:50.175 INFO ProgressMeter - chr15:99311892 223.2 252607000 1131832.3
02:21:21.859 INFO ProgressMeter - chr16:11734 223.7 252705000 1129598.7
02:21:43.791 INFO ProgressMeter - chr16:172892 224.1 254684000 1136587.8
02:22:03.342 INFO ProgressMeter - chr16:172915 224.4 255657000 1139273.4
02:22:25.674 INFO ProgressMeter - chr16:172951 224.8 256450000 1140914.8
02:22:47.226 INFO ProgressMeter - chr16:172972 225.1 257138000 1142150.4
02:23:10.667 INFO ProgressMeter - chr16:172975 225.5 257676000 1142557.4
02:23:31.516 INFO ProgressMeter - chr16:173007 225.9 258435000 1144160.0
02:23:54.379 INFO ProgressMeter - chr16:173167 226.3 259393000 1146467.2
02:24:17.700 INFO ProgressMeter - chr16:173193 226.6 260331000 1148639.7
02:24:42.999 INFO ProgressMeter - chr16:173226 227.1 261163000 1150170.9
02:25:08.218 INFO ProgressMeter - chr16:173250 227.5 262160000 1152428.6
02:25:18.219 INFO ProgressMeter - chr16:173262 227.7 262941000 1155015.4
02:25:35.139 INFO ProgressMeter - chr16:173262 227.9 262946000 1153608.3
02:25:45.500 INFO ProgressMeter - chr16:173277 228.1 263478000 1155067.2
02:26:04.399 INFO ProgressMeter - chr16:173278 228.4 263573000 1153890.4
02:26:30.245 INFO ProgressMeter - chr16:173290 228.9 264238000 1154624.2
02:26:40.250 INFO ProgressMeter - chr16:173299 229.0 264693000 1155770.2
02:26:58.047 INFO ProgressMeter - chr16:173299 229.3 264778000 1154645.9
02:27:08.053 INFO ProgressMeter - chr16:173309 229.5 265260000 1155907.2
02:27:24.117 INFO ProgressMeter - chr16:173313 229.7 265332000 1154873.6
02:27:34.120 INFO ProgressMeter - chr16:173327 229.9 265940000 1156680.6
02:27:50.526 INFO ProgressMeter - chr16:173327 230.2 265969000 1155432.6
02:28:00.528 INFO ProgressMeter - chr16:173474 230.4 266605000 1157357.4
02:28:19.262 INFO ProgressMeter - chr16:173477 230.7 266772000 1156514.8
02:28:29.266 INFO ProgressMeter - chr16:173498 230.8 267363000 1158239.7
02:28:45.728 INFO ProgressMeter - chr16:173505 231.1 267609000 1157929.1
02:28:55.735 INFO ProgressMeter - chr16:173513 231.3 268260000 1159908.9
02:29:14.799 INFO ProgressMeter - chr16:173516 231.6 268499000 1159349.6
02:29:26.306 INFO ProgressMeter - chr16:173530 231.8 269249000 1161626.0
02:29:45.410 INFO ProgressMeter - chr16:173534 232.1 269438000 1160846.8
02:29:58.003 INFO ProgressMeter - chr16:173549 232.3 270161000 1162910.2
02:30:15.836 INFO ProgressMeter - chr16:173552 232.6 270338000 1162185.2
02:30:28.059 INFO ProgressMeter - chr16:173584 232.8 270929000 1163706.8
02:30:48.040 INFO ProgressMeter - chr16:173585 233.1 271138000 1162941.0
02:30:59.610 INFO ProgressMeter - chr16:173588 233.3 271765000 1164667.0
02:31:19.404 INFO ProgressMeter - chr16:173589 233.7 271879000 1163510.6
02:31:30.206 INFO ProgressMeter - chr16:173601 233.9 272361000 1164676.1
02:31:53.758 INFO ProgressMeter - chr16:176694 234.2 272767000 1164457.5
02:32:17.890 INFO ProgressMeter - chr16:176729 234.6 273752000 1166659.4
02:32:40.950 INFO ProgressMeter - chr16:176770 235.0 274664000 1168632.0
02:33:06.097 INFO ProgressMeter - chr16:176778 235.4 275600000 1170527.1
02:33:16.105 INFO ProgressMeter - chr16:176791 235.6 276410000 1173136.2
02:33:35.168 INFO ProgressMeter - chr16:176793 235.9 276482000 1171861.6
02:33:45.169 INFO ProgressMeter - chr16:176811 236.1 276757000 1172199.1
02:34:07.481 INFO ProgressMeter - chr16:176958 236.5 277276000 1172550.5
02:34:18.800 INFO ProgressMeter - chr16:176992 236.7 278269000 1175811.7
02:34:35.920 INFO ProgressMeter - chr16:176992 236.9 278272000 1174408.4
02:35:00.599 INFO ProgressMeter - chr16:177013 237.4 279272000 1176586.3
02:35:23.872 INFO ProgressMeter - chr16:177061 237.7 280271000 1178868.7
02:35:46.493 INFO ProgressMeter - chr16:177091 238.1 281248000 1181105.1
02:36:12.209 INFO ProgressMeter - chr16:177103 238.6 282233000 1183112.1
02:36:36.659 INFO ProgressMeter - chr16:177121 239.0 283194000 1185116.2
02:37:02.831 INFO ProgressMeter - chr16:177285 239.4 284047000 1186519.9
02:37:12.833 INFO ProgressMeter - chr16:177321 239.6 284986000 1189614.0
02:37:31.809 INFO ProgressMeter - chr16:177322 239.9 285015000 1188166.4
02:37:55.433 INFO ProgressMeter - chr16:177342 240.3 286015000 1190381.3
02:38:21.024 INFO ProgressMeter - chr16:177395 240.7 287015000 1192426.5
02:38:45.142 INFO ProgressMeter - chr16:177411 241.1 288015000 1194586.2
02:38:55.146 INFO ProgressMeter - chr16:1778581 241.3 288432000 1195489.0
02:39:05.197 INFO ProgressMeter - chr16:3068237 241.4 288557000 1195177.2
02:39:15.242 INFO ProgressMeter - chr16:4859151 241.6 288674000 1194833.3
02:39:27.405 INFO ProgressMeter - chr16:11499048 241.8 288791000 1194315.5
02:39:47.725 INFO ProgressMeter - chr16:14513026 242.1 288946000 1193285.2
02:39:57.783 INFO ProgressMeter - chr16:18433357 242.3 289082000 1193021.0
02:40:07.821 INFO ProgressMeter - chr16:21626720 242.5 289214000 1192742.2
02:40:17.857 INFO ProgressMeter - chr16:23493768 242.6 289368000 1192554.7
02:40:27.926 INFO ProgressMeter - chr16:27346564 242.8 289540000 1192438.8
02:40:37.965 INFO ProgressMeter - chr16:28498842 243.0 289677000 1192181.6
02:40:48.010 INFO ProgressMeter - chr16:29508010 243.1 289775000 1191763.8
02:41:11.889 INFO ProgressMeter - chr16:30092425 243.5 289865000 1190185.8
02:41:21.935 INFO ProgressMeter - chr16:31120227 243.7 290004000 1189938.4
02:41:32.022 INFO ProgressMeter - chr16:48299701 243.9 290137000 1189663.6
02:41:42.022 INFO ProgressMeter - chr16:53488699 244.0 290298000 1189510.8
02:41:52.127 INFO ProgressMeter - chr16:57544248 244.2 290410000 1189149.1
02:42:02.155 INFO ProgressMeter - chr16:67198362 244.4 290506000 1188728.6
02:42:12.165 INFO ProgressMeter - chr16:68560646 244.6 290600000 1188302.1
02:42:22.206 INFO ProgressMeter - chr16:70555069 244.7 290697000 1187885.8
02:42:43.549 INFO ProgressMeter - chr16:74323854 245.1 290756000 1186402.4
02:42:53.558 INFO ProgressMeter - chr16:81930153 245.2 290945000 1186366.0
02:43:03.688 INFO ProgressMeter - chr16:87442113 245.4 291077000 1186087.7
02:43:13.801 INFO ProgressMeter - chr16:89544143 245.6 291188000 1185725.7
02:43:43.523 INFO ProgressMeter - chr17:61076 246.1 291294000 1183769.5
02:43:53.524 INFO ProgressMeter - chr17:5530580 246.2 291608000 1184243.3
02:44:03.542 INFO ProgressMeter - chr17:8928971 246.4 291799000 1184216.0
02:44:13.564 INFO ProgressMeter - chr17:16441378 246.6 292049000 1184427.7
02:44:23.574 INFO ProgressMeter - chr17:21019633 246.7 292216000 1184303.7
02:44:33.601 INFO ProgressMeter - chr17:29108652 246.9 292368000 1184117.7
02:44:43.718 INFO ProgressMeter - chr17:31249009 247.1 292559000 1184082.7
02:44:53.849 INFO ProgressMeter - chr17:35871499 247.2 292736000 1183989.9
02:45:03.965 INFO ProgressMeter - chr17:38777776 247.4 292862000 1183692.4
02:45:14.041 INFO ProgressMeter - chr17:40344520 247.6 292994000 1183422.6
02:45:32.709 INFO ProgressMeter - chr17:42274475 247.9 293072000 1182251.9
02:45:42.715 INFO ProgressMeter - chr17:44254630 248.1 293206000 1181997.3
02:45:52.884 INFO ProgressMeter - chr17:45137604 248.2 293365000 1181830.8
02:46:02.920 INFO ProgressMeter - chr17:46940561 248.4 293548000 1181771.7
02:46:12.935 INFO ProgressMeter - chr17:48344820 248.6 293678000 1181501.1
02:46:22.940 INFO ProgressMeter - chr17:50742056 248.7 293788000 1181151.3
02:46:32.962 INFO ProgressMeter - chr17:58321691 248.9 293920000 1180889.0
02:46:46.985 INFO ProgressMeter - chr17:58345708 249.1 293929000 1179817.3
02:46:57.000 INFO ProgressMeter - chr17:61160481 249.3 294092000 1179681.2
02:47:07.015 INFO ProgressMeter - chr17:64122144 249.5 294226000 1179429.0
02:47:17.071 INFO ProgressMeter - chr17:66370049 249.6 294357000 1179161.9
02:47:27.073 INFO ProgressMeter - chr17:69264831 249.8 294509000 1178983.5
02:47:37.265 INFO ProgressMeter - chr17:75228952 250.0 294623000 1178638.4
02:47:47.535 INFO ProgressMeter - chr17:76040414 250.1 294710000 1178179.7
02:48:11.418 INFO ProgressMeter - chr17:77488791 250.5 294818000 1176738.9
02:48:21.437 INFO ProgressMeter - chr17:80291668 250.7 294974000 1176577.3
02:48:31.499 INFO ProgressMeter - chr17:81693539 250.9 295123000 1176384.8
02:48:46.592 INFO SplitNCigarReads - Shutting down engine
[August 27, 2020 2:48:46 AM PDT] org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads done. Elapsed time: 251.13 minutes.
Runtime.totalMemory()=76986974208
htsjdk.samtools.util.RuntimeIOException: Attempt to add record to closed writer.
at htsjdk.samtools.util.AbstractAsyncWriter.write(AbstractAsyncWriter.java:57)
at htsjdk.samtools.AsyncSAMFileWriter.addAlignment(AsyncSAMFileWriter.java:53)
at org.broadinstitute.hellbender.utils.read.SAMFileGATKReadWriter.addRead(SAMFileGATKReadWriter.java:21)
at org.broadinstitute.hellbender.tools.walkers.rnaseq.OverhangFixingManager.writeReads(OverhangFixingManager.java:358)
at org.broadinstitute.hellbender.tools.walkers.rnaseq.OverhangFixingManager.flush(OverhangFixingManager.java:338)
at org.broadinstitute.hellbender.tools.walkers.rnaseq.SplitNCigarReads.closeTool(SplitNCigarReads.java:187)
at org.broadinstitute.hellbender.engine.GATKTool.doWork(GATKTool.java:1052)
at org.broadinstitute.hellbender.cmdline.CommandLineProgram.runTool(CommandLineProgram.java:139)
at org.broadinstitute.hellbender.cmdline.CommandLineProgram.instanceMainPostParseArgs(CommandLineProgram.java:191)
at org.broadinstitute.hellbender.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:210)
at org.broadinstitute.hellbender.Main.runCommandLineProgram(Main.java:163)
at org.broadinstitute.hellbender.Main.mainEntry(Main.java:206)
at org.broadinstitute.hellbender.Main.main(Main.java:292)

Any feedback and suggestions to solve this is much appreciated.

Thanks for your time and help!

-Kathie