How to make a 1kg_ref_panel_v1.ped?

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2tong

• August 11, 2020 02:09
• Edited

Recently, I just want to use ：gs://gcp-public-data--broad-references/hg38/v0/sv-resources/ref-panel/1KG/v1/ped/1kg_ref_panel_v1.ped.

The content is as follows:

```

HG00129 HG00129 0 0 1 0
HG00140 HG00140 0 0 1 0

```

I want to make a file like this for my own dataset, but I have no idea about the meaning of these columns. How do I understand the meaning of these columns?

***

Thank you very much.

 

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• 

  Genevieve Brandt (she/her)

  • August 17, 2020 23:49

  Please see this documentation: https://gatk.broadinstitute.org/hc/en-us/articles/360035531972-PED-Pedigree-format

  It is a PLINK file, so if you need more information, you may want to look at their documentation.

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