Can you please provide
a) GATK version used : 188.8.131.52
b) Exact GATK commands used :
c) The entire error log if applicable. - No error
Hi GATK Team,
The above command will generate summary and detailed metrics files. In that there will be Number of common and novel SNPs, InDels and other multiallelic variation. But could you please help me how can I get an information of which position are novel and which position are common when compare to given dbsnps.
Thank you in advance
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